View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0044_low_7 (Length: 303)
Name: NF0044_low_7
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0044_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 8412464 - 8412329
Alignment:
| Q |
61 |
cacaaactcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcatatatcgttgtggtgtatt |
160 |
Q |
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| T |
8412464 |
cacaaactcacagtaaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcatatatcgttgtagtgtatt |
8412365 |
T |
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| Q |
161 |
acttctctaatgagatgataggtgcatcagaacttat |
197 |
Q |
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| T |
8412364 |
ac-tctctaatgagatgataggtgcatcagaacttat |
8412329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 8351179 - 8351042
Alignment:
| Q |
68 |
tcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcat-atatcgttgtggtgtattacttct |
166 |
Q |
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| T |
8351179 |
tcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgatatcgttgtagtgtatttcttct |
8351080 |
T |
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| Q |
167 |
ctaatgagatgataggtgcatcag-aacttatcagcaa |
203 |
Q |
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| T |
8351079 |
ctaatgagttgataggcgaatgagaaacttatcagcaa |
8351042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 8451785 - 8451736
Alignment:
| Q |
66 |
actcacaataaacaaaaagtcccacatcgaaaactttcaacaatagagag |
115 |
Q |
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| T |
8451785 |
actcacagtagacaaaaagtcccacatcaaaaactttcaataatagagag |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 8358903 - 8358843
Alignment:
| Q |
81 |
aaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaagcaacgcat |
142 |
Q |
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| T |
8358903 |
aaagtcccacatcgaaaa-tttctacaatataaagagtaagttggctataaaagcagcgcat |
8358843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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