View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0044_low_9 (Length: 262)
Name: NF0044_low_9
Description: NF0044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0044_low_9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2753760 - 2753527
Alignment:
| Q |
1 |
ttaatattcaactattttatttcctcgttgaatgattgcatttttgttatttatctatctacatttatgtttaatccattataaagtttgtacttttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2753760 |
ttaatattcaactattttatttcctcattgaatgattgcatttttgttatttatctatctacatttatgtttaatccattataaagtttgtacttttgga |
2753661 |
T |
|
| Q |
101 |
attgtgaagttacattttacattctcatacacataggtgacataagtgaaaagctttcttgagttgaaagaaaccaatatacatgagtaagtcctcatct |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2753660 |
attgtgaagttacattgtacattctcatacacataagtgacataagtgaaaagctttcttgagttgaaagaaaccaatatacatgagtaagtcctcatct |
2753561 |
T |
|
| Q |
201 |
cattctcagtattaaaatttgaaatcccaacctt |
234 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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|
| T |
2753560 |
cattctcagtgttaaaatttgaaatcccaacctt |
2753527 |
T |
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