View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0047_high_5 (Length: 285)
Name: NF0047_high_5
Description: NF0047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0047_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 43194604 - 43194326
Alignment:
| Q |
1 |
ttaattttcacttaatttacttttgcatgattatacttgcaattgaagtattaattagattttgattatttgagtaattaatt-------atatgactac |
93 |
Q |
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| T |
43194604 |
ttaattttcacttaatttacttttgcatgattacacttgcaattgaagtattaattagattttgattgtttgagtaattaattcattgatatatgactac |
43194505 |
T |
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| Q |
94 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
193 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43194504 |
acttacgattgcaacggagtccgcggcagcgatggcaaggatatcagcacatgatacaacgccaggacatacattctctacggctgtcttaatgttgtca |
43194405 |
T |
|
| Q |
194 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagta |
272 |
Q |
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| T |
43194404 |
atgacatcaaatccacgagcagagtttctattcggatttgcgtttttctctccagtaaagtttgatgtgtcatctagta |
43194326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 43189050 - 43188872
Alignment:
| Q |
94 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
193 |
Q |
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| T |
43189050 |
acttacaattgcaacggagtctgtggcagcaatggcaaggatatcagcacatgatacaactccggggcatacgttctctaccgccgtctttatgttgtca |
43188951 |
T |
|
| Q |
194 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagta |
272 |
Q |
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| T |
43188950 |
atgacatcgaatcctcgaacagagttcttattcgggagtgcgttcttctctccggtaaagtttgatgtgtcatctagta |
43188872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 43180222 - 43180046
Alignment:
| Q |
93 |
cacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtc |
192 |
Q |
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||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| |
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| T |
43180222 |
cacttacaattgcaacagagtctgcggcagcaatggctaggatatcagcacatgatacaactccggggcatacgttctctacggctgtctttatgttgtc |
43180123 |
T |
|
| Q |
193 |
aatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatcta |
269 |
Q |
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|||||||||||||||||||| ||||||||||| || ||||| |||||||| || |||||| ||||||||||||||| |
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| T |
43180122 |
gatgacatcaaatccacgagcggagtttctatttggatttgcattcttctcaccggtaaagcttgatgtgtcatcta |
43180046 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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