View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0047_low_2 (Length: 487)
Name: NF0047_low_2
Description: NF0047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0047_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 29 - 476
Target Start/End: Complemental strand, 10318667 - 10318220
Alignment:
| Q |
29 |
agatagatggcttcttttcaacaaaatccatgaaaagaaagtttcagatgctgcaacaaagtatgagaagaaattaatagatttactttcgaggaattca |
128 |
Q |
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| T |
10318667 |
agatagatggcttcttttcaacaaaatccatgaaaagaaagtatcagatgctgcaacaaagtatgagaagaaattaatagatttactttcgaggaattca |
10318568 |
T |
|
| Q |
129 |
gaagtatcagaatcactcgaagctaagcttctttcaagttcaatattggtttgttctaaggactatcaggtgaggagaagaatagggaatggaagtcagt |
228 |
Q |
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| T |
10318567 |
gaagtatcagaatcactcgaagctaagcttctttcaagttcaatattggtttgttctaaggactatcaggtgaggagaagaatagggaatggaagtcagt |
10318468 |
T |
|
| Q |
229 |
acaaagagattcaatggttaggtgaatattttgttttaagacaatgttctggtgacactgatgctttggaaagtgagattaaagaacttttatctctttc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10318467 |
acaaagagattcaatggttaggtgaatattttgttttaagacaatgttctggtgacactgatgctttggaaagtgagattaaagaacttttatctctttc |
10318368 |
T |
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| Q |
329 |
acatccaaatataatggactgtctttgtggttttactgatgaggagaagaaagaatgttttctgttgatggaactgatgagcaaaacacttagcaatcat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10318367 |
acatccaaatataatggactgtctttgtggttttactgatgaggagaagaaagaatgttttctgttgatggaactgatgagcaaaacacttagcaatcat |
10318268 |
T |
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| Q |
429 |
attaaagaggtttatggtccgaggaagcgattaccattcttgcttcat |
476 |
Q |
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| T |
10318267 |
attaaagaggtttatggtccgaggaagcgattaccattcttgcttcat |
10318220 |
T |
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