View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0047_low_4 (Length: 312)
Name: NF0047_low_4
Description: NF0047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0047_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 40201740 - 40201470
Alignment:
| Q |
13 |
tgaacctaaactttgtccacgagatgaacaaatgactattgttttggccagtaacagaagtcaaaattgaaaagttgtaaaattaagtgctacatattct |
112 |
Q |
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| T |
40201740 |
tgaacctaaactttgtccacgagatgaacaaatgactattgttttggccagtaacagaagtcaaaattgaaaagttgtaaaattaagtgctacatattct |
40201641 |
T |
|
| Q |
113 |
cagagaaagagggaaatgagtacctttccatttgcggcagattcctttacaacatctactacttcatttgatatcctagaaaagggatgtgcagagtctc |
212 |
Q |
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| T |
40201640 |
cagagaaagagggaaatgagtacctttccatttgcggcagattcctttacaacatctactacttcatttgatatcctagaaaagggatgtgcagagtctc |
40201541 |
T |
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| Q |
213 |
cactaggagagccattagggccattcaaggacagcctactatcttgataaacttgttttttgtattcttgc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40201540 |
cactaggagagccattagggccattcaaggacagcctactatcttgataaacttgttttttgtattcttgc |
40201470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 45086009 - 45085956
Alignment:
| Q |
209 |
tctccactaggagagccattagggccattcaaggacagcctactatcttgataa |
262 |
Q |
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| T |
45086009 |
tctccactgggagaaccataaggtccattcaaggacaacctactttcttgataa |
45085956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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