View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0047_low_8 (Length: 269)
Name: NF0047_low_8
Description: NF0047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0047_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 6734759 - 6734967
Alignment:
| Q |
41 |
cttcatgcatgatatccttggtggatcacatccatcagcaagagtagtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagctc |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6734759 |
cttcatgcatgatatccttggtggatcacatccatcagcaagagtggtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagctc |
6734858 |
T |
|
| Q |
141 |
aacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaatctcccaaaccttgtaggtctct |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6734859 |
aacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaatctcccaaaccttgtaggtctca |
6734958 |
T |
|
| Q |
241 |
gtgctgctc |
249 |
Q |
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||||||||| |
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| T |
6734959 |
gtgctgctc |
6734967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 41 - 217
Target Start/End: Complemental strand, 52200286 - 52200110
Alignment:
| Q |
41 |
cttcatgcatgatatccttggtggatcacatccatcagcaagagtagtagcaggaattgtagcaaacagtgatgtaaccggcttaccattctccaagctc |
140 |
Q |
| |
|
||||||||||||||| || ||||| ||||| |||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| |||||||| | |
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| T |
52200286 |
cttcatgcatgatatactaggtgggtcacacccatcagcaagagtagtaaccggaatagtagcaaacagtgatgtaacaggcttacccttctccaaaaac |
52200187 |
T |
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| Q |
141 |
aacaacaatctcttccctattactggaggaattccattagttaaccctaaactcaatggcattgtcacaaacaacaa |
217 |
Q |
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|||||||| ||||||| || || |||||||| || ||||| | ||| || ||||||||||| ||||||||||||| |
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| T |
52200186 |
aacaacaacatcttcccaatcacaggaggaatacccttagtcatccccaagctcaatggcatcatcacaaacaacaa |
52200110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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