View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0048_high_4 (Length: 249)
Name: NF0048_high_4
Description: NF0048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0048_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 41917053 - 41916917
Alignment:
| Q |
22 |
tcatcataatcataagtcactcaagtctaggtcttttcattatttagtttttggagaaaactaaaccaattgcaaattgaaccgaaccacaaaaactgtt |
121 |
Q |
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| T |
41917053 |
tcatcataatcataagtcactcaagtctaggtcttttcattatttagtttttgaagaaaactaaaccaattgcaaattgaaccgaaccacaaaaactgtt |
41916954 |
T |
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| Q |
122 |
tgtgaaaattgaaccaaattgcaattttttcacatga |
158 |
Q |
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| T |
41916953 |
tgtgaaaattgaaccaaattgcaattttttcacatga |
41916917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 41916920 - 41916880
Alignment:
| Q |
195 |
atgattttgaagctaagctgatttttaccgatataattttt |
235 |
Q |
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| T |
41916920 |
atgatttcgaagctaagctgatttttacggatataaatttt |
41916880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 30911267 - 30911062
Alignment:
| Q |
25 |
tcataatcataagt-cactcaagtctaggtcttttcattatttagtttttggagaaaactaaaccaattgcaaattgaaccgaaccacaaaaactgtttg |
123 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
30911267 |
tcataatcataagttcactcaagtctaggtcttttcattatttaggttttggagaaaactaaaccaa------attgaaccaaaccacaaaaacagttac |
30911174 |
T |
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| Q |
124 |
tgaaaattgaaccaaattgcaattttttcacatgagttaaacttaactagttttatatgcttcggttcactatgattttgaagctaagctgatttttacc |
223 |
Q |
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| T |
30911173 |
tgaaaattgaaccaaattgcaattttttcacttgaatcaaaattaactaattttatatgcatcggttcactatgatttcaaagctgggctgatttttacc |
30911074 |
T |
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| Q |
224 |
gatataattttt |
235 |
Q |
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||| | |||||| |
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| T |
30911073 |
gatttcattttt |
30911062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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