View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0048_low_1 (Length: 512)
Name: NF0048_low_1
Description: NF0048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0048_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 30 - 501
Target Start/End: Complemental strand, 34422471 - 34422001
Alignment:
| Q |
30 |
aatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagtatcatattgcatgagttttcagtttgtactttccttttttgctta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34422471 |
aatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagtatcatattgcatgagtt---agtttgtactttccttttttgctta |
34422375 |
T |
|
| Q |
130 |
cttacggtttaaaaagattgtgtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34422374 |
cttacggtttaaaaagattgtgtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcat |
34422275 |
T |
|
| Q |
230 |
gttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtgcaaccaacatcaac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34422274 |
gttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtgcaaccaacatcaac |
34422175 |
T |
|
| Q |
330 |
taa-nnnnnnnattcttcattcagcgtctatggttctcttt-aattaataactataaaatcttttcaaatacatgtattttgtatattcttaattttann |
427 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34422174 |
taattttttttattcttcattcagcgtctatggttctctttaaattaataactataaaatcttttcaaatacatgtattttgtatattcttaatttaatt |
34422075 |
T |
|
| Q |
428 |
nnnnnncccttgataaatatgatccaaaaatgttggggtagtttatacatggttttgctttcaattgggtctct |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34422074 |
tattttcccttgataaatatgatccaaaaatgttggggtagtttatacatggttttgctttcaattgggtctct |
34422001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 151 - 310
Target Start/End: Complemental strand, 34430625 - 34430466
Alignment:
| Q |
151 |
gtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacac |
250 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
34430625 |
gtaaattaattagcaagaatatgcttggttgttttgataaaaatagtatattagagaaagcacctgcagcaaaaggcatgttctcttttcttaaagatac |
34430526 |
T |
|
| Q |
251 |
gcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggt |
310 |
Q |
| |
|
||| ||| |||||||||||||||||||||| ||||||| ||| || ||| ||||||| |
|
|
| T |
34430525 |
aactggagtacaagatagtcctcaacttcaagctcatgctgcaaaagtttttgaaatggt |
34430466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 34685780 - 34685946
Alignment:
| Q |
149 |
gtgtaaattaattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaac |
248 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
34685780 |
gtgtaaattaaataacaagaatatgtttggttgctttaattaaaatagtatattagagaaagcacctgcagcaaagggtatgttctcttttcttaaggac |
34685879 |
T |
|
| Q |
249 |
acgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
315 |
Q |
| |
|
| | | ||| |||||||||| ||||| ||||| || |||||||| || ||| ||||||||||| |
|
|
| T |
34685880 |
tcaacgggagtacaagatagtccccaactccaagctcacgctgaaaaagtttttggaatggtgagtg |
34685946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 34678640 - 34678797
Alignment:
| Q |
158 |
aattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgag |
257 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| || | ||| |
|
|
| T |
34678640 |
aattaacaataatatttttggttgctttatttaaaacagtatattggagaaagcacctgcagcaaagggtatgttctcttttcttaaggactcagctgga |
34678739 |
T |
|
| Q |
258 |
gtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
315 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||||| ||| || ||| ||||||||||| |
|
|
| T |
34678740 |
gtacaagatagtcctaaacttcaagtccatgctggaaaagtttttggaatggtgagtg |
34678797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 18270770 - 18270902
Alignment:
| Q |
182 |
ttttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctcaacttcaa |
281 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | | ||| ||| ||||||||||| |||| ||| |
|
|
| T |
18270770 |
tttttattaaaatagtatattagacaaagcacctgcagcaaagggcatgttctcttttcttaaggattcagctggagtacaagatagtcctaaactccaa |
18270869 |
T |
|
| Q |
282 |
gcccatgctgaaaaggtgtttcaaatggtgagt |
314 |
Q |
| |
|
||||| |||||||| || ||| |||||||||| |
|
|
| T |
18270870 |
gcccacgctgaaaaagtttttggaatggtgagt |
18270902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 295
Target Start/End: Complemental strand, 27842566 - 27842420
Alignment:
| Q |
150 |
tgtaaattaattaacaagaatatgtttggttat-tttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaac |
248 |
Q |
| |
|
||||||||||||| ||| ||||||||| || | ||| |||||| ||| |||||||||||||||||||| ||||| ||| ||||||||||||||||| || |
|
|
| T |
27842566 |
tgtaaattaattagcaaaaatatgttttattttattttattaaaatagcatattagagaaagcacctgcggcaaaaggcttgttctcttttcttaaggac |
27842467 |
T |
|
| Q |
249 |
acgcctgaggtaaaagatagtcctcaacttcaagcccatgctgaaaa |
295 |
Q |
| |
|
| ||| ||| |||||||||||||||| ||||| || |||||||| |
|
|
| T |
27842466 |
tcagctggagtacaagatagtcctcaactccaagctcacgctgaaaa |
27842420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 311
Target Start/End: Original strand, 34649171 - 34649324
Alignment:
| Q |
158 |
aattaacaagaatatgtttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgag |
257 |
Q |
| |
|
||||||||| ||| | ||||| | |||||||||| ||||||||| ||||||||||||||| |||||| ||| |||||||||| ||| | || ||| |
|
|
| T |
34649171 |
aattaacaataatgtttttggctgctttgattaaaatagtatatttgagaaagcacctgcaacaaaggatatgctctcttttctgaagggctcgactgga |
34649270 |
T |
|
| Q |
258 |
gtaaaagatagtcctcaacttcaagcccatgctgaaaaggtgtttcaaatggtg |
311 |
Q |
| |
|
||| |||||||||| |||| ||||| ||||||||| | || ||| |||||||| |
|
|
| T |
34649271 |
gtacaagatagtcccgaactccaagctcatgctgaacaagtttttgaaatggtg |
34649324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 34430746 - 34430692
Alignment:
| Q |
30 |
aatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagt |
84 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
34430746 |
aatcattcaaacaaaatctctctggctatagtgttttgttctatactatgtaagt |
34430692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 34685657 - 34685711
Alignment:
| Q |
30 |
aatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagt |
84 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || |||||||||| |||||| |
|
|
| T |
34685657 |
aatcattcaaacaaaaccttcctggctatagtgttttcttctacactacgtaagt |
34685711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 34678491 - 34678542
Alignment:
| Q |
30 |
aatcatttaaacaaaatcttcccggctatagtgtcttgttctacactatgtaagt |
84 |
Q |
| |
|
|||||||||||||||||| | || |||||||| |||||||||||||||||||| |
|
|
| T |
34678491 |
aatcatttaaacaaaatcct---ggttatagtgttttgttctacactatgtaagt |
34678542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 174 - 315
Target Start/End: Complemental strand, 2068268 - 2068127
Alignment:
| Q |
174 |
tttggttattttgattaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttcttaagaacacgcctgaggtaaaagatagtcctc |
273 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
2068268 |
tttggttattttgattgaaatagtatattggagaaagcccctgcagcaaagggcatgttctcttttcttaaggacacagctggagtacaagatagtccta |
2068169 |
T |
|
| Q |
274 |
aacttcaagcccatgctgaaaaggtgtttcaaatggtgagtg |
315 |
Q |
| |
|
|||| ||| ||||||||||| || ||| ||||||||||| |
|
|
| T |
2068168 |
aactccaaagtcatgctgaaaaagtttttggaatggtgagtg |
2068127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 40847578 - 40847524
Alignment:
| Q |
187 |
attaaattagtatattagagaaagcacctgcagcaaagggcatgttctcttttct |
241 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
40847578 |
attaaaatagtatattggataaagcacctgcagcaaaaggcatgttttcttttct |
40847524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 652 times since January 2019
Visitors: 1100