View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0048_low_2 (Length: 445)
Name: NF0048_low_2
Description: NF0048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0048_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 78 - 435
Target Start/End: Original strand, 40723839 - 40724196
Alignment:
| Q |
78 |
gagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttc |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723839 |
gagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttc |
40723938 |
T |
|
| Q |
178 |
tcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaac |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723939 |
tcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaac |
40724038 |
T |
|
| Q |
278 |
aatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttct |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724039 |
aatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttct |
40724138 |
T |
|
| Q |
378 |
tcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctg |
435 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40724139 |
tcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctg |
40724196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 240 - 435
Target Start/End: Complemental strand, 40666066 - 40665870
Alignment:
| Q |
240 |
gattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcat |
339 |
Q |
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| T |
40666066 |
gattctagcccatccataagagtcagaagttgtgagacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcat |
40665967 |
T |
|
| Q |
340 |
caa-taaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctg |
435 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40665966 |
caaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctg |
40665870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 40666208 - 40666102
Alignment:
| Q |
78 |
gagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttc |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666208 |
gagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttc |
40666109 |
T |
|
| Q |
178 |
tcaatgc |
184 |
Q |
| |
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||||||| |
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|
| T |
40666108 |
tcaatgc |
40666102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 96 - 433
Target Start/End: Original strand, 41092684 - 41093021
Alignment:
| Q |
96 |
gtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctcaatgccgggtcaatgc |
195 |
Q |
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||||| || ||||| || ||||| ||||||| || ||||||||||||||||| || ||||||||||| || |||||||| || | ||| |||||||||| |
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| T |
41092684 |
gtatgaattcgaagaacctcaagacgcccaacctcgtctggaacaccaatatcaatctccctatcaaaccttccaaacctcctaagtgcagggtcaatgc |
41092783 |
T |
|
| Q |
196 |
tattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttc |
295 |
Q |
| |
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||||||| | ||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| ||||| || |||||||| || |||||||| |
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| T |
41092784 |
tattgggcctatttgtggctcccataacaattacatgtgcacgtgatttaagaccatccataagggtcaagagttgggagacaatcctcctctctacttc |
41092883 |
T |
|
| Q |
296 |
accatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttcaaatgctttcctaaga |
395 |
Q |
| |
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||| | || || || ||||| || || || ||||| || |||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||| |
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| T |
41092884 |
accgtgagttttctctcgcttaggagctatggaatctatctcatcaataaagatgatggaaggtgcattcttctcagcttcctcaaatgccttccttaga |
41092983 |
T |
|
| Q |
396 |
ttgctttcactctctccagccattttggacataatctc |
433 |
Q |
| |
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|||||||||||||| ||||| | ||| ||||| ||||| |
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| T |
41092984 |
ttgctttcactctcaccagcaagtttcgacattatctc |
41093021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 81 - 417
Target Start/End: Complemental strand, 27977635 - 27977299
Alignment:
| Q |
81 |
agcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctca |
180 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || || ||||| || |||| ||||||||| ||||||||||| || |||| |||||| || |||||||| | | |
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| T |
27977635 |
agcttcatattttttgtatggatgcggagaacctcaagacgtccaacttcatctggtacaccaatatcaatctcccgatcaaaccttccaaacctccgaa |
27977536 |
T |
|
| Q |
181 |
atgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaat |
280 |
Q |
| |
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|| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||| || || |||||||| |
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| T |
27977535 |
gagcagggtcgatgctattgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaat |
27977436 |
T |
|
| Q |
281 |
ccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcttca |
380 |
Q |
| |
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|||| || ||||||||||| ||||| |||| ||| || ||||| || || || |||||||| |||||||| || ||||||||||| || |||||||| |
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| T |
27977435 |
tcttcgctcaacttcaccattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcg |
27977336 |
T |
|
| Q |
381 |
aatgctttcctaagattgctttcactctctccagcca |
417 |
Q |
| |
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||||| ||||| ||||| ||||||||||| ||||||| |
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| T |
27977335 |
aatgccttcctcagattactttcactctcaccagcca |
27977299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 15690360 - 15690253
Alignment:
| Q |
251 |
atccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatg |
350 |
Q |
| |
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|||||||||| ||| | |||||||||||||||||| || |||||| || |||||| || | |||||| || ||||||||| |||||||||||||| | |
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| T |
15690360 |
atccataagattcaagacttgtgaaacaatccttctatcaacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaag |
15690263 |
T |
|
| Q |
351 |
atggatggtg |
360 |
Q |
| |
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||| |||||| |
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|
| T |
15690262 |
atgaatggtg |
15690253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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