View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0048_low_3 (Length: 366)
Name: NF0048_low_3
Description: NF0048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0048_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 42818186 - 42817865
Alignment:
| Q |
1 |
atttccattgactaaacaacaattagccaaaagcttcaaaagatnnnnnnnntaaggtgatacactaataaaacttttacaacaaacatgaatattacaa |
100 |
Q |
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| T |
42818186 |
atttccattgactaaacaacaattagccaaaagcttcaaaagataaaaaa--taaggtgatacactaataaaacttttacaacaaa-------------- |
42818103 |
T |
|
| Q |
101 |
agaaaaatgtgcttattggttgaacatatctgttgacagaggcaaaagagtgagttaacttatggtgtctgcacattagaatattcagattcagaggatg |
200 |
Q |
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| T |
42818102 |
-gaaaaatgtgcttattggttgaacatatctgttgacataggcaaaagagtgagttaacttatggtgtctgcacattagaatattcagattcagaggatg |
42818004 |
T |
|
| Q |
201 |
ttctgttcttaaactcaggatgtttaatttcctcaatcattctaacagcttcatccattctaggcctcatatctggtgtcttagccacacatgcaagtgc |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42818003 |
ttctgttcttaaactcaggatttttaatttcctcaatcattctaacagcttcatccattctaggcctcatatctggtgtcttagccacacatgcaagtgc |
42817904 |
T |
|
| Q |
301 |
aatctgaagcatctgcaccatttcctcttcgacatattg |
339 |
Q |
| |
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| T |
42817903 |
aatctgaagcatctgcaccatttcctcttcgacatattg |
42817865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 336
Target Start/End: Complemental strand, 28842523 - 28842370
Alignment:
| Q |
183 |
attcagattcagaggatgttctgttcttaaactcaggatgtttaatttcctcaatcattctaacagcttcatccattctaggcctcatatctggtgtctt |
282 |
Q |
| |
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||||||||||||| ||||| || ||||| |||||||| || |||||||| | || |||||||| ||||||||||| | ||||| ||||| ||| |
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| T |
28842523 |
attcagattcagaagatgtacttttcttcaactcagggtgcctaatttccgccatgtttctaacaacttcatccattgttggcctattatctaccacctt |
28842424 |
T |
|
| Q |
283 |
agccacacatgcaagtgcaatctgaagcatctgcaccatttcctcttcgacata |
336 |
Q |
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| T |
28842423 |
tgccacacaagccaatgcaatctgaagcatctgcaccatctcctcttcaacata |
28842370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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