View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0048_low_5 (Length: 272)
Name: NF0048_low_5
Description: NF0048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0048_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 39877338 - 39877133
Alignment:
| Q |
38 |
agctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaattcattcacaaaa |
137 |
Q |
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| T |
39877338 |
agctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaatacattcacaaaa |
39877239 |
T |
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| Q |
138 |
attgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggannnnnnnnngcagagatttttgtcaatttttcccctgactctggtt |
237 |
Q |
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| T |
39877238 |
attgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggatttttttttgcagagatttttgtcaatttttcccctgactctggtt |
39877139 |
T |
|
| Q |
238 |
cttttc |
243 |
Q |
| |
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|||||| |
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| T |
39877138 |
cttttc |
39877133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 44780572 - 44780368
Alignment:
| Q |
38 |
agctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaattcattcacaaaa |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |
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| T |
44780572 |
agctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgggttctactacattcacaaaa |
44780473 |
T |
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| Q |
138 |
attgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggannnnnnnnngcagagatttttgtcaatttttcccctgactctggtt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||| |||||||| ||||| |
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| T |
44780472 |
attgtcaataagtggaatacagctttaataggtaatggaatttgagttctagga-gtttttttgcagaggtttttgtcaattttttccctgactttggtt |
44780374 |
T |
|
| Q |
238 |
cttttc |
243 |
Q |
| |
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|||||| |
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| T |
44780373 |
cttttc |
44780368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 2898641 - 2898762
Alignment:
| Q |
48 |
ttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaattcattcacaaaaattgtcaata |
147 |
Q |
| |
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|||||||||||||| |||||||| || || ||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
2898641 |
ttcttaagagttgatgatgaacagattaaaatgtttgagaatcgtgtgaggcagattcttatgtcttcgggttctactacattcacaaaaattgtcaata |
2898740 |
T |
|
| Q |
148 |
agtggaatacagctttaatagg |
169 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2898741 |
agtggaatacagctttaatagg |
2898762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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