View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0050-INSERTION1 (Length: 761)
Name: NF0050-INSERTION1
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050-INSERTION1 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 8 - 761
Target Start/End: Complemental strand, 29838842 - 29838093
Alignment:
| Q |
8 |
gtacaaacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838842 |
gtacaaacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtct |
29838743 |
T |
|
| Q |
108 |
gctttctatcagtcgataccaaaagattaaatttcacattatcggattgtggcaaaatggaacnnnnnnnnnngaaagaatatattaactacttttcagt |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29838742 |
gctttctattagtcgataccaaaagattaaatttcacattatcggattgtggcaaaatggaacaaaaaaa----aaagaatatattaactacttttcagt |
29838647 |
T |
|
| Q |
208 |
ttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatcacagaagcacacagaagaaacaagatcatttga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838646 |
ttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatcacagaagcacacagaagaaacaagatcatttga |
29838547 |
T |
|
| Q |
308 |
taatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttgtagtattacttggtacataccatctgatactct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838546 |
taatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttgtagtattacttggtacataccatctgatactct |
29838447 |
T |
|
| Q |
408 |
ctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaaccgacaacacctcatac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838446 |
ctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaaccgacaacacctcatac |
29838347 |
T |
|
| Q |
508 |
caagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattcttctctataggaagtaaattaaactcaaaaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838346 |
caagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattcttctctataggaagtaaattaaactcaaaaa |
29838247 |
T |
|
| Q |
608 |
tatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgacttcctacaccataaagataag |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838246 |
tatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgacttcctacaccataaagataag |
29838147 |
T |
|
| Q |
708 |
taataataatcagtactttgtcttacagagagcatacatcaaacaccggggtct |
761 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838146 |
taataataatcagtattttgtcttacagagagcatacatcaaacaccggggtct |
29838093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 392 - 533
Target Start/End: Original strand, 34628143 - 34628284
Alignment:
| Q |
392 |
taccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaac |
491 |
Q |
| |
|
|||| ||||||||| | |||||||||| || |||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |
|
|
| T |
34628143 |
taccttctgatacttttggctgatgaccatcggtggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagac |
34628242 |
T |
|
| Q |
492 |
cgacaacacctcataccaagcattagacatggttgtttcctg |
533 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
34628243 |
tgacaacacttcataccaagcattagacatggctgtttcctg |
34628284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 688
Target Start/End: Original strand, 34628391 - 34628451
Alignment:
| Q |
628 |
tacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgactt |
688 |
Q |
| |
|
||||||| |||||| || || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34628391 |
tacctctgcttcatcctcctgattcatccaaacaaattgtactttgtattgtaaatgactt |
34628451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 34627445 - 34627526
Alignment:
| Q |
13 |
aacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaa |
94 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| |||| || || || ||||| ||| |||||||||||||||||||| |
|
|
| T |
34627445 |
aacctgagctcagcaggcaactgtggaagaacatgcctgacagcacagtcaagatacccaccagcctttaagaagatatcaa |
34627526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 516 times since January 2019
Visitors: 1096