View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0050-INSERTION10 (Length: 707)
Name: NF0050-INSERTION10
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050-INSERTION10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Original strand, 27998184 - 27998881
Alignment:
| Q |
8 |
aatggatctatctatgcttataaggttgactaccattgtagaagagaattagtcaaacactaatggtgtttttgtgtaatgctattactaaggacccaca |
107 |
Q |
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| T |
27998184 |
aatggatctatctatgcttataaggttgactaccattgtagaagagaattagtcaaacactaatggtgtttttgtgtaatgctattactaaggacccaca |
27998283 |
T |
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| Q |
108 |
ttatgaaattgaattttaagtcaatgcatagttgctatcccattccatagcatgcctaccaaaaagcaaaaagtgctaatgtcaatataggaagagggag |
207 |
Q |
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| T |
27998284 |
ttatgaaattgaattttaagtcaatgcatagttgctatcccattccatagcatgcctaccaaaaagccaaaagtgctaatgtcaatataggaagagggag |
27998383 |
T |
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| Q |
208 |
acccacaaaaattaacacagcacaagaaaggagatatgaaattatggatggcaaaaagtatgagtatggacctgtgttaagagttttaatcatttgtagt |
307 |
Q |
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| T |
27998384 |
acacacaaaaattaacacagca--agaaaggagatatgaaattatggatggcaaaaagtatgagtatggacctgtgttaagagttttaatcatttgtagt |
27998481 |
T |
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| Q |
308 |
gcatgatcatgtatacaacaaagataaagtaagcaatccttcatccttgtcaatttttctcatgcttaaaaatatagtttcaagatttcattacaatttt |
407 |
Q |
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| T |
27998482 |
gcatgatcatgtatagaacaaagataaagtaagcaatccttcatccttgtcaatttttctcatccttaaaaatatagtttcaagatttcattacaatttt |
27998581 |
T |
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| Q |
408 |
atagttctagcttaacctacatgcttaaaattaatttggagtggaatttatagatgattatgttatgatcacattttgcactaatataagtaaattgaat |
507 |
Q |
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| T |
27998582 |
atagttctagcttaacctacatgcttaaaattaatttggagtggattttatagatgattatgttatgatcacattttgcactaatataagtaaattgaat |
27998681 |
T |
|
| Q |
508 |
ggttagcatcaacacagttctttccaccctttaactaaattgagcaagaatgttaaaaaatcattgctctttataggtttgacttccaaaaatctctatc |
607 |
Q |
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| T |
27998682 |
ggttagcatcaacacagttctttccaccctttaactaaattgagcaagaatgttgaaaaatcattgctctttataggtttgacttccaaaaatctctatc |
27998781 |
T |
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| Q |
608 |
agtttcacaactttagcaggcataatagatattgttagttctttggtgttccgacaaatacaaagcaaacaattaaatcttgaaatcttgtttctgtttc |
707 |
Q |
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| T |
27998782 |
agtttcacaactttagcaggcataatagatattgttagttgtttgttgttccgacaaatacaaagcaaacaattaaatcttgaaatcttgtttctgtttc |
27998881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 547 - 620
Target Start/End: Complemental strand, 4532436 - 4532363
Alignment:
| Q |
547 |
ttgagcaagaatgttaaaaaatcattgctctttataggtttgacttccaaaaatctctatcagtttcacaactt |
620 |
Q |
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| T |
4532436 |
ttgagcaagaatgttgaaaaatcattgctctttataggtttgacttccaaaaatctctatcagtttcacaactt |
4532363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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