View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0050-INSERTION4 (Length: 664)
Name: NF0050-INSERTION4
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050-INSERTION4 |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 648
Target Start/End: Complemental strand, 2096247 - 2095582
Alignment:
| Q |
7 |
agaatcggctacaaataatacattgttctataaataaatnnnnnnnntagcagaagaataaaggaagaagaa---------aattcacctctcgctctct |
97 |
Q |
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| T |
2096247 |
agaatcggctacaaataatacattgttctataaataaataaaaaaa-tagcagaagaataaaggaagaagaagaagaagaaaattcacctctcgctctct |
2096149 |
T |
|
| Q |
98 |
atgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacagcagtagtagtagtataaatagtaaaactgatcggtttgttataacaaa |
197 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2096148 |
atgatttttcaactccaagtctagctctaatgtgtttgtta-gagtccgcagtagtagtagtagtataaatagtaaaactgatcggtttgttataacaaa |
2096050 |
T |
|
| Q |
198 |
ttctgaaaccggatttcaaattttttattaaccagagtaaattctttactctgagtgagagtacaaacgctgtaaatggtaaggtaaaatctaaccaggg |
297 |
Q |
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| T |
2096049 |
ttctgaaaccggatttcaaattttttattaaccagagtaaattctttactctgagt--gagtacaaacgctgtaaatggtaaggttaaatctaaccaggg |
2095952 |
T |
|
| Q |
298 |
taactctggtgtgtactatggtggtnnnnnnntgaaccacggtaactgcaatgagtatggctagtaataatggttacactgtcaatcctatgtcactcac |
397 |
Q |
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| T |
2095951 |
taactctggtgtgtactatggtggtaaaaaaatgaaccacggtaactgcaatgagtatggctagtaataatggttacactgtcaatcctatgtcactcac |
2095852 |
T |
|
| Q |
398 |
tgtcgtgttattattcttttgttgaaacttggtgttgatg--------------------ttgtgagactaataataacatggcagattcaaatttttac |
477 |
Q |
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| T |
2095851 |
tgtcgtgttattattc-tttgttgaaacttggtgttgatgttgtcattgttgtgtcttatttgtgagactgataataacatggcagattcaaatttttac |
2095753 |
T |
|
| Q |
478 |
tcggtttgttcgaaagaaaaggtatcaatagtgtacatatttcttttagatgaaattaattgattaaattgaaaacaaaagtttggcaaacaagttcatt |
577 |
Q |
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| T |
2095752 |
tcggtttgttcgaaagaaaaggtatcaatagtgtacatatttcttttagatgaaattaattgattaaattgaaaacaaaagtttggcaaacaagttcatt |
2095653 |
T |
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| Q |
578 |
tgggtttcaacttgagatgtaaaagtttgctcttaagttttagatttgattcttcttgatattagtttaac |
648 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
2095652 |
tgggtttcaacttgagatttaaaagtttgctcttaaattttagattcgattcttcttgatattagtttaac |
2095582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 2104969 - 2104821
Alignment:
| Q |
92 |
ctctctatgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacagcagtagtagtagtataaatagtaaaactgatcggtttgttat |
191 |
Q |
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|||||||||||||||||||||| | || || |||||||||||||||| |||||||||| | || || |||| |||||||| ||||||||||||||| |
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| T |
2104969 |
ctctctatgatttttcaactccaattccaggtctaatgtgtttgtta-gagtccacagtacta----tactata--tagtaaaattgatcggtttgttat |
2104877 |
T |
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| Q |
192 |
aacaaattctgaaaccggatttcaaattttttattaaccagagtaaattctttact |
247 |
Q |
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| T |
2104876 |
aacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttact |
2104821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 2052826 - 2052762
Alignment:
| Q |
172 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagta |
236 |
Q |
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| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccagagta |
2052762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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