View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0050-INSERTION5 (Length: 709)
Name: NF0050-INSERTION5
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050-INSERTION5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 37616155 - 37615638
Alignment:
| Q |
8 |
gatgcttgctcaaaatgtaaggagaagagaactgaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatg |
107 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
37616155 |
gatgcttgctcaaaatgtaaggagaagataactgaaattgtggaagaagctaaaaatgtagcctctattaccatacaaacccgcgagaagattgataatg |
37616056 |
T |
|
| Q |
108 |
taaaaaagaagaagcgggagttggattcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccattataaaacttaatatgtta |
207 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| | ||| | |||||| ||| || ||||||| ||||||| |
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| T |
37616055 |
taaaaaagaag---cgggagttgaattcaaattatgatacacttgaaggaaattatgccatat--aaactctcacctgcataatgaaactta-tatgtta |
37615962 |
T |
|
| Q |
208 |
tttaatgttttcaggtgaattggtgctgatggttacgtattttacaatagatatacttataagaaaccaactatgttagtcaatttgctttgaattgata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37615961 |
tttaatgttttcaggtgaattggtgctgatggttacatattttgcaatagatacacttattagaaaccaactatgttagtcaatttgctttgaattgata |
37615862 |
T |
|
| Q |
308 |
tatttaaattcagggtggagtaaaataggccggacaattatggttatgtatgtctatcatatct--ataattttttaacctatgtaagatgatcatacgt |
405 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||| | ||||||||||||||||||| |||| ||||| |
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| T |
37615861 |
tatttaaattcagggtggagtaacataggccgaacaattatggctatgtatgtctctcatatcttcgaatttttttaacctatgtaagacgatcgtacgt |
37615762 |
T |
|
| Q |
406 |
caattaattaatcgcatttagtcagaacaatttggtacattgagtaactatatattaattttatcggatatat---gattgctttcaactaatattttta |
502 |
Q |
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| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| |
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| T |
37615761 |
c----aattaatcgcattacgtcagaacaattcagtatattgagtaactatatattaattttattggatatataacaatggctttcaactaatagtttta |
37615666 |
T |
|
| Q |
503 |
gcaaattatgacccatgcggcagcacgg |
530 |
Q |
| |
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| |||||||||||| ||| ||||||||| |
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| T |
37615665 |
gtaaattatgacccgtgcagcagcacgg |
37615638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 545
Target Start/End: Complemental strand, 17558860 - 17558824
Alignment:
| Q |
509 |
tatgacccatgcggcagcacgggtagacaatctagtt |
545 |
Q |
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|||||||| ||||||||||||||||||| |||||||| |
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| T |
17558860 |
tatgacccgtgcggcagcacgggtagacgatctagtt |
17558824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 22083324 - 22083733
Alignment:
| Q |
8 |
gatgcttgctcaaaatgtaaggagaagagaactgaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatg |
107 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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| T |
22083324 |
gatgcttgctcaaaatgtaaggagaagataactgaaattgtggaagaagctaaaaatgtagcctctattaccatacaaacccgcgaca------------ |
22083411 |
T |
|
| Q |
108 |
taaaaaagaagaagcgggagttggattcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccattataaaacttaatatgtta |
207 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||| | |||||||||| || |||||| |||||||| |
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| T |
22083412 |
---------agaagcgggagttgaattcaaattatgatacacttgaaggaaattatgccata--taaactctcacctccataatgaaactt-atatgtta |
22083499 |
T |
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| Q |
208 |
tttaatgttttcaggtgaattggtgctgatggttacgtattttacaatagatatacttataagaaaccaactatgttagtcaatttgctttgaattgata |
307 |
Q |
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||||| ||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||| |
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| T |
22083500 |
tttaacgttttcaggtgaattggagctgatggttacatattttgcaatagatacacttataagaaaccaa----------------actttgaattgata |
22083583 |
T |
|
| Q |
308 |
tatttaaattcagggtggagtaaaataggccggacaattatggttatgtatgtctatcatatctataattttttaacctatgtaagatgatcatacgtca |
407 |
Q |
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||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| ||||||| || |||||||||||| ||||||||| |
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| T |
22083584 |
tatttaaattcagggtggagtaacataggccgaacagttatggctatgtatgtctctcatatc--------ttcgacctatgtaagacgatcatacg--- |
22083672 |
T |
|
| Q |
408 |
attaattaatcgcatttagtcagaacaatttggtacattgagtaactatatattaattttat |
469 |
Q |
| |
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| ||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
22083673 |
-tgaattaatcgcattacgtcagaacaattcagtacattgagtaactatatcttaattttat |
22083733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 9e-72; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 6173477 - 6173296
Alignment:
| Q |
8 |
gatgcttgctcaaaatgtaaggagaagagaactgaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
6173477 |
gatgcttgctcaaaatgtaaggagaagagaactgaaattgtggaagaagctaaaaatgtagcctctacgaccatacaaacccgtgagaagattgataatc |
6173378 |
T |
|
| Q |
108 |
taaaaaagaagaagcgggagttggattcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccatt |
189 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| || ||||||||| ||||||||| ||||| | ||||||||||||| |
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| T |
6173377 |
taaaaaagaagaagcgggagttggattcgaattatgagacgcttgaaggaaattatgccataatgagactgtcacctccatt |
6173296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 6135422 - 6135241
Alignment:
| Q |
8 |
gatgcttgctcaaaatgtaaggagaagagaactgaaattgtggaagaagctaaaaatgtggcctctatgaccatacaaacccgcgagaagattgataatg |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6135422 |
gatgcttgctcaaaatgtaaggagaagagatctgaaattttggaagaagctaaaaatgtagcctctatgaccatacaaacccgcgagaagattgataatg |
6135323 |
T |
|
| Q |
108 |
taaaaaagaagaagcgggagttggattcaaattatgatacacttgaaggagattatgccaaaatgaaattgtcacctccatt |
189 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||| ||||||||| || |||||| ||||| | || |||||||||| |
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| T |
6135322 |
taaacaagaagaagcggaagttggattcaaattatgatacgcttgaaggaaatcatgccataatgagactggcacctccatt |
6135241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 544 - 668
Target Start/End: Original strand, 17524437 - 17524571
Alignment:
| Q |
544 |
tttaacaaatttgtgtgaaccatcgcggtattctaccaagtttctcttgctcaaatg-ttggccaattgcagaggaggataagagaactcaaaatcaag- |
641 |
Q |
| |
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||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |
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| T |
17524437 |
tttaagaaatttgtgtgaaacatcgcggtactctaccaagtttctcttgctccaatgtttggccaattgcagaggagattaagagaactcaaaattaagc |
17524536 |
T |
|
| Q |
642 |
--------ctcgtaagtggcaactgtttgtacata |
668 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
17524537 |
tttaattactcgtaagtggcaactgtttgtacata |
17524571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 672 - 702
Target Start/End: Original strand, 17524854 - 17524884
Alignment:
| Q |
672 |
acatcgaattaaattagcaataccgtggcca |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17524854 |
acatcgaattaaattagcaataccgtggcca |
17524884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 16367881 - 16367918
Alignment:
| Q |
509 |
tatgacccatgcggcagcacgggtagacaatctagttt |
546 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
16367881 |
tatgacccgtgcggcagcacgggtagacgatctagttt |
16367918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 649 - 709
Target Start/End: Complemental strand, 52140883 - 52140823
Alignment:
| Q |
649 |
gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtac |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52140883 |
gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtac |
52140823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 547
Target Start/End: Original strand, 6923510 - 6923571
Alignment:
| Q |
486 |
ttcaactaatatttttagcaaattatgacccatgcggcagcacgggtagacaatctagttta |
547 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||| || |||||||||||| |||||||||| |
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|
| T |
6923510 |
ttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttta |
6923571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 643
Target Start/End: Complemental strand, 52140944 - 52140901
Alignment:
| Q |
600 |
gttggccaattgcagaggaggataagagaactcaaaatcaagct |
643 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
52140944 |
gttggccaattgcagaggagattaagagaactcaaaattaagct |
52140901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 549
Target Start/End: Original strand, 52130754 - 52130795
Alignment:
| Q |
508 |
ttatgacccatgcggcagcacgggtagacaatctagtttaac |
549 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
52130754 |
ttatgacccgtgcggcagcacgggtagacaatctagtctaac |
52130795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 545
Target Start/End: Complemental strand, 5561588 - 5561552
Alignment:
| Q |
509 |
tatgacccatgcggcagcacgggtagacaatctagtt |
545 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| |
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|
| T |
5561588 |
tatgacccgtgcggcagcacgggtagacgatctagtt |
5561552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 544
Target Start/End: Original strand, 24763319 - 24763355
Alignment:
| Q |
508 |
ttatgacccatgcggcagcacgggtagacaatctagt |
544 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24763319 |
ttatgacccgtgcggcagcacgggtagacaatctagt |
24763355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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