View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0050-INSERTION7 (Length: 702)
Name: NF0050-INSERTION7
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050-INSERTION7 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Original strand, 6418323 - 6418893
Alignment:
| Q |
8 |
attatcatagccaataagatataagcagttgctaacaaaatgggagaccaaaacggggatcatgccaaatccaacagttttttactctccaagaatttgc |
107 |
Q |
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| T |
6418323 |
attatcatagccaataagatataagcagttgctaacaaaatgggagaccaaaacggggatcatgccaaatccaacagttttttactctccaagaatttgc |
6418422 |
T |
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| Q |
108 |
tgatcaattgtgtttgactggtccatgttaaaaagccattcatcactgagaataagccacgtgtcataaccctattaggctaagtagtactagaaaaatg |
207 |
Q |
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| T |
6418423 |
tgatcaattgtgtttgactggtccatgttaaaaagccattcatcactgagaataagccacgtgtcatagccctattaggctaagtagtacttgaaaaatg |
6418522 |
T |
|
| Q |
208 |
ttgaatcacgtgagtgacaactatgtcctttactagctacnnnnnnnnnntattaat----------aaaaaatattacaagtaccatttgtgtcctttt |
297 |
Q |
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| T |
6418523 |
ttgaatcacgtgagtgacaactatgtcctttactagctacaaaaaaaaaaatttaataaaaaaaataaaaaaatattacaagtaccctttgtgtcctttt |
6418622 |
T |
|
| Q |
298 |
ctgcatgttagatcaggcttttttctaattcctggtcatgagtgaggaccgagtaattctacttctaaacattgattctagcctaaaagactatgaccta |
397 |
Q |
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| T |
6418623 |
ctgcatgttagatcaggcttttttctaattcctggtcatgagtgaggaccgagtaattctacttctaaacattgattctagcctacaagactatgaccta |
6418722 |
T |
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| Q |
398 |
tatgggatatttgaaagnnnnnnnnntatttattcatgnnnnnnnntgcatgataatgattattttcgttgagttttggtggctccatttgtgtgttctc |
497 |
Q |
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| T |
6418723 |
tatgggatatttgaaag-aaaaaaaatatttattcatgaaaaaaaaagcatgataatgattattttcgttgagttttggtggctccatttgtgt-ttctc |
6418820 |
T |
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| Q |
498 |
cccatgattggcaaaacagaatttggatacaatagccgtttaatgtctagttataaggaacatttaattcatg |
570 |
Q |
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| T |
6418821 |
cccatgattgccaaaacagaatttggatacaatagccgtttaatgtctagttataaggaacatttaattcatg |
6418893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 631 - 702
Target Start/End: Original strand, 6418953 - 6419024
Alignment:
| Q |
631 |
aataagtcaaaattgattttaacatgtttagttgatagtantgaatttgattatatcatatatgtttggcac |
702 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
6418953 |
aataagtcaaaattgattttaacatgtttaattgatagtagtgaatttgattgtatcatatatgcttggcac |
6419024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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