View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0050-INSERTION9 (Length: 655)
Name: NF0050-INSERTION9
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050-INSERTION9 |
 | |
|
| [»] chr1 (16 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 8 - 655
Target Start/End: Complemental strand, 48585851 - 48585203
Alignment:
| Q |
8 |
gttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585851 |
gttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattg |
48585752 |
T |
|
| Q |
108 |
gcaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585751 |
acaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagca |
48585652 |
T |
|
| Q |
208 |
ctccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattan |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585651 |
ctccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattat |
48585552 |
T |
|
| Q |
308 |
nnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48585551 |
ttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatg |
48585452 |
T |
|
| Q |
408 |
tccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585451 |
tccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgt |
48585352 |
T |
|
| Q |
508 |
gcatcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaa |
607 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585351 |
gcatcctttttgttcatttccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaa |
48585252 |
T |
|
| Q |
608 |
ctagagcatgaattcatagattatctttc-caaaaatcaatccccataa |
655 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
48585251 |
ctagagcatgaattcatagattatatttcgaaaaaatcaatccccataa |
48585203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 655
Target Start/End: Complemental strand, 48640424 - 48639776
Alignment:
| Q |
8 |
gttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48640424 |
gttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattg |
48640325 |
T |
|
| Q |
108 |
gcaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || | |||| |||||||||||||||||||| |
|
|
| T |
48640324 |
acaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacgatggtttaccagatggcagtggttcggccttcagagctcttcagca |
48640225 |
T |
|
| Q |
208 |
ctccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattan |
307 |
Q |
| |
|
|| |||||||||||||||||||| |||| || |||||| ||||| || ||||||||||| |||| |||||||||||||||||||||||||||||| || |
|
|
| T |
48640224 |
ctatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatcatgccgattcaaacaaaccattttcatgtatcataaacaactat |
48640125 |
T |
|
| Q |
308 |
nnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatg |
407 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48640124 |
ttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgtcatggactaattccgctgctgttttcaccacttactataactatg |
48640025 |
T |
|
| Q |
408 |
tccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgt |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || | |
|
|
| T |
48640024 |
tccacaaattaacatctttccctacaaatgaagaaccttatattgatgttcaactcaattcttctatagttcttaaatacaatgaaatctcagactttat |
48639925 |
T |
|
| Q |
508 |
gcatcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaa |
607 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48639924 |
acatccttttttcccatttccatttctaggtaaactcatcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaa |
48639825 |
T |
|
| Q |
608 |
ctagagcatgaattcatagattatctttc-caaaaatcaatccccataa |
655 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
48639824 |
ctagagcatgatttcatagattatatttcaaaaaaatcaatcaccataa |
48639776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 241 - 655
Target Start/End: Complemental strand, 48667438 - 48667023
Alignment:
| Q |
241 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa |
340 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| | ||| |||| |
|
|
| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa |
48667339 |
T |
|
| Q |
341 |
cacaatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaag |
440 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||||| | |||||||||||| || |||| | |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48667338 |
cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaag |
48667239 |
T |
|
| Q |
441 |
aaccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaa |
540 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| || | |||||||||||| || |||| | ||||| | |
|
|
| T |
48667238 |
aaccttatattgatgttcaactcaactcttctatagttcttaaatacaatgaaatcccagattttatacatcctttttgtagatatccaattctagggac |
48667139 |
T |
|
| Q |
541 |
actcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc-caa |
639 |
Q |
| |
|
|||| | | | || | |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| || |
|
|
| T |
48667138 |
actcaccacggcacagataaaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaa |
48667039 |
T |
|
| Q |
640 |
aaatcaatccccataa |
655 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
48667038 |
aaatcaatcgccataa |
48667023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 243 - 655
Target Start/End: Complemental strand, 48661841 - 48661428
Alignment:
| Q |
243 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
|
|
| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
343 |
caatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
442 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| | | ||||| || || |||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
48661741 |
caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaa |
48661642 |
T |
|
| Q |
443 |
ccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
542 |
Q |
| |
|
||||| ||||||||||||||| | |||||| ||||||||||||||| |||||| ||||| | | ||||||||| |||||||||| | ||||| | || |
|
|
| T |
48661641 |
ccttacattgatgttcaactcaactcttctatagttcttaaatacaacgaaatcccagattatatacatccttttaatccatttccaattctagggacac |
48661542 |
T |
|
| Q |
543 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc-caaaa |
641 |
Q |
| |
|
| | | | | | |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| |||| |
|
|
| T |
48661541 |
ttaccacggcacaaataaaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaa |
48661442 |
T |
|
| Q |
642 |
atcaatccccataa |
655 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
48661441 |
atcaatcaccataa |
48661428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 243 - 642
Target Start/End: Original strand, 48618046 - 48618442
Alignment:
| Q |
243 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
343 |
caatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
442 |
Q |
| |
|
||||||||||| ||| | |||| | | || || ||||||| | |||||||||||||| |||||||| | || ||||||| || | |||| |
|
|
| T |
48618146 |
tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaactggtacgtttcccttcacaaacagaa |
48618245 |
T |
|
| Q |
443 |
ccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
542 |
Q |
| |
|
|||||||||||||||||| | |||| | |||||||||||||||||||||| ||||| || | ||||||||| ||| ||||||||| ||||| | || |
|
|
| T |
48618246 |
ccttatattgatgttcaatta---ccttttcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacac |
48618342 |
T |
|
| Q |
543 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaa |
642 |
Q |
| |
|
|| |||||||| |||||||| | ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| ||||| |
|
|
| T |
48618343 |
tcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaa |
48618442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 243 - 655
Target Start/End: Complemental strand, 48653409 - 48652999
Alignment:
| Q |
243 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
|
|
| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
343 |
caatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
442 |
Q |
| |
|
||||||||||||||||| ||| | | ||| | ||||| | ||| ||||||| |||||| |||||||| | || ||||||| ||||||||||| |
|
|
| T |
48653309 |
tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaa |
48653210 |
T |
|
| Q |
443 |
ccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
542 |
Q |
| |
|
|||||||||||||||||| | |||| | |||||||||| | ||||||||| ||||| || ||||||||||| || |||||| || | || | || |
|
|
| T |
48653209 |
ccttatattgatgttcaatta---ccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggacac |
48653113 |
T |
|
| Q |
543 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaa-aa |
641 |
Q |
| |
|
||||||||||| | ||||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| || || |
|
|
| T |
48653112 |
tcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaa |
48653013 |
T |
|
| Q |
642 |
atcaatccccataa |
655 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
48653012 |
atcaatcctcataa |
48652999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 245 - 624
Target Start/End: Complemental strand, 11547518 - 11547142
Alignment:
| Q |
245 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
344 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
345 |
atattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaacc |
444 |
Q |
| |
|
||||||||||||||||| ||| | | ||| || | ||||| | |||||||||||||| || ||||| | || ||| ||| | ||||||| |
|
|
| T |
11547418 |
gtattccttctgttttattatgggttcaatccactgcagtttttgctgcttactataactatttcaacaaactggtacattttcctttggaaaaagaacc |
11547319 |
T |
|
| Q |
445 |
ttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaactc |
544 |
Q |
| |
|
|||||||||||||||| | |||| | ||| |||||||||||||||||| ||||| || | ||||||||| |||||| |||||| ||||| | |||| |
|
|
| T |
11547318 |
ttatattgatgttcaatta---ccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactc |
11547222 |
T |
|
| Q |
545 |
gtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcat |
624 |
Q |
| |
|
|||||||| |||||||| | || ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||| |
|
|
| T |
11547221 |
atcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcat |
11547142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 243 - 642
Target Start/End: Complemental strand, 48629155 - 48628759
Alignment:
| Q |
243 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
342 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |
|
|
| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca |
48629056 |
T |
|
| Q |
343 |
caatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
442 |
Q |
| |
|
| |||||||||| |||||| |||| |||||| | |||||||| |||||||||||||||||||||||||| | |||||| ||| || | |||| |
|
|
| T |
48629055 |
tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaacttgtaccttttccttcagaaacagaa |
48628956 |
T |
|
| Q |
443 |
ccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaac |
542 |
Q |
| |
|
||||||||||||||||| | |||| || ||| |||||||||||||||||| ||||| | ||||||||| ||| | |||| | ||||| | || |
|
|
| T |
48628955 |
ccttatattgatgttcatttg---ccttttatagtccttaaatacaatgaaatcccagatttaacacatccttttaatccctatccaattctagggacac |
48628859 |
T |
|
| Q |
543 |
tcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaa |
642 |
Q |
| |
|
|| || | | | || ||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
48628858 |
tcatcacgtcacatatgaataacttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaa |
48628759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 48662054 - 48661896
Alignment:
| Q |
12 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaa |
111 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||| || |||||||||||||||| ||||||||| ||||| || || | || |||||| ||| |
|
|
| T |
48662054 |
gactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaacagagaaagctggcaaagacatgggaattgttgacgacatcaccaacaa |
48661955 |
T |
|
| Q |
112 |
attagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
170 |
Q |
| |
|
|||||||||||| || ||||||||| || || |||||||||||||||| || |||||| |
|
|
| T |
48661954 |
attagcaactccgataggtgatggttctctcattttcgagttctttgatcatagtttac |
48661896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 48617815 - 48617972
Alignment:
| Q |
12 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaa |
111 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||| ||||||| ||||||||||| ||||||||| |||| || ||| |||||| ||||||| || |
|
|
| T |
48617815 |
gactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagctggcaaagacataagaactgttaacaatatcattgaaaa |
48617914 |
T |
|
| Q |
112 |
attagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
169 |
Q |
| |
|
|| | ||| |||||||||||||| || | |||| |||||||| |||||||||||| |
|
|
| T |
48617915 |
atcactcacttcaattggtgatggttctcttacttttgagttcttagatgatggttta |
48617972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 11547744 - 11547593
Alignment:
| Q |
19 |
aaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaaattagca |
118 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||| ||||||| ||| ||||||||| |||| | | | | |||||||||| ||| |||| || |
|
|
| T |
11547744 |
aaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagctggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtc |
11547645 |
T |
|
| Q |
119 |
actccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
170 |
Q |
| |
|
|| |||| ||| ||||| || || |||| |||||||||||||||||||||| |
|
|
| T |
11547644 |
acatcaataggtaatggttctctcacttttgagttctttgatgatggtttac |
11547593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 48653638 - 48653483
Alignment:
| Q |
14 |
ctaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaaat |
113 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||| || |||| ||||||||| | ||||| ||| |||| || ||| |||||||||||||| |||| |
|
|
| T |
48653638 |
ctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatcacaacagaaagagctggaaaagacataagaactgttaacaacatcattgaaaaat |
48653539 |
T |
|
| Q |
114 |
tagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
169 |
Q |
| |
|
| |||||||||||||||||| | || |||| ||||||||||||||| ||||| |
|
|
| T |
48653538 |
cattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta |
48653483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 48629358 - 48629282
Alignment:
| Q |
12 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcga |
88 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||| ||||| || |||||||||| || |||||| |||||||| |
|
|
| T |
48629358 |
gactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagagaaagcaggcaaagacatgcga |
48629282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 48656537 - 48656467
Alignment:
| Q |
566 |
ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc |
636 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||||||||| ||| || || |||||| |||| |
|
|
| T |
48656537 |
ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttc |
48656467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 48657087 - 48656998
Alignment:
| Q |
13 |
actaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat |
102 |
Q |
| |
|
|||||| |||| |||||||||||||||| | |||| |||||||||||||| ||| ||||||||| ||||| | ||||||||||||| |
|
|
| T |
48657087 |
actagggaagtgtcttgctgcaaagggttcttctgtcatcttcaccacaacgcagaaagctggcaaagacatggaaactgctaacaacat |
48656998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 48667643 - 48667567
Alignment:
| Q |
12 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcga |
88 |
Q |
| |
|
||||||| || | |||||||||||||||||| |||| ||||||| ||||||||| | | ||||||||| |||||| |
|
|
| T |
48667643 |
gactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagaaaaaggtggcaaaaatatgcga |
48667567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 636
Target Start/End: Complemental strand, 27228385 - 27228066
Alignment:
| Q |
314 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcgtggactaattccgctactgttttcaccacttactataactatgtccaca |
413 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | | |||||||||| ||||| |||| | | |||| | |||||||| | |||||||||||||| | |||| |
|
|
| T |
27228385 |
ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca |
27228286 |
T |
|
| Q |
414 |
aattaacacctttccctacaaatgaagaaccttatattgatgttcaactcgtcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcc |
513 |
Q |
| |
|
|| | || ||||||| | |||| |||||||||||||||||||||| | ||| |||| ||| ||||||||||||||||| ||||| | | ||| |
|
|
| T |
27228285 |
aactggtacgtttcccttcgaatgcagaaccttatattgatgttcaatt-gtc--ttctctagtccttaaatacaatgaaataccagatttccttcattg |
27228189 |
T |
|
| Q |
514 |
tttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagag |
613 |
Q |
| |
|
|||| || | |||||| || || |||| | || ||| || ||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || |
|
|
| T |
27228188 |
ttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaa |
27228089 |
T |
|
| Q |
614 |
catgaattcatagattatctttc |
636 |
Q |
| |
|
||||| |||||| ||||| |||| |
|
|
| T |
27228088 |
catgatttcataaattatatttc |
27228066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 27223953 - 27223868
Alignment:
| Q |
558 |
ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaat |
643 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| || ||| |||| |||||| |
|
|
| T |
27223953 |
ttaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaat |
27223868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 25892527 - 25892613
Alignment:
| Q |
16 |
aggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat |
102 |
Q |
| |
|
|||||| | ||||||||||| |||||| || | ||||||||||||||||| || || |||| |||||||||| |||||||||||| |
|
|
| T |
25892527 |
aggaaaatctcttgctgcaaggggtgcatctatcatcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat |
25892613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 27224490 - 27224328
Alignment:
| Q |
12 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaa |
111 |
Q |
| |
|
|||||||||||| |||||| |||||||| | |||||||||||| ||||||||||| ||||||||| | || || ||| |||||| |||| || || |
|
|
| T |
27224490 |
gactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggcaaagaattgagaactgttaacaatatcactgaaaa |
27224391 |
T |
|
| Q |
112 |
attagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccaga |
174 |
Q |
| |
|
||||| | |||| ||||| ||||| || || | || ||||||||||||| |||||| |||| |
|
|
| T |
27224390 |
attagtcattccagttggtaatggttctctcacatttcagttctttgatgacggtttatcaga |
27224328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 27228690 - 27228531
Alignment:
| Q |
15 |
taggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaaatt |
114 |
Q |
| |
|
||||||||| |||||| |||||||| | |||||||||||| |||||| |||| ||||||| | | || || ||| |||||||||||||| |||| |
|
|
| T |
27228690 |
taggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaactgagaaagctggcagagagttgagaactgttaacaacatcattgataaatc |
27228591 |
T |
|
| Q |
115 |
agcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccaga |
174 |
Q |
| |
|
|| | |||| ||||| ||||| || || | |||||||||||||| || |||||| |||| |
|
|
| T |
27228590 |
agtcattccagttggtaatggttctctcgcattcgagttctttgaagacggtttatcaga |
27228531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 19665171 - 19665328
Alignment:
| Q |
12 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattggcaa |
111 |
Q |
| |
|
|||||| ||||| |||||||||||||||| | | || ||||||| ||| ||||||| ||||||||| |||||| | ||| ||||||||||| | ||| |
|
|
| T |
19665171 |
gactagcaaagtgtcttgctgcaaagggttcttcagtcatcttcatcactacagagaaagctggcaaagacatgcaaactgttaacaacatcactcacaa |
19665270 |
T |
|
| Q |
112 |
attagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
169 |
Q |
| |
|
|| | |||||||| ||||||||| || || |||| | |||||||||||||||||| |
|
|
| T |
19665271 |
atcactcactccaataggtgatggttctctcattttccacttctttgatgatggttta |
19665328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 618
Target Start/End: Original strand, 19665704 - 19665774
Alignment:
| Q |
548 |
ttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatga |
618 |
Q |
| |
|
|||||| |||||||| | || |||||||||||||||||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
19665704 |
ttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatga |
19665774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 514 times since January 2019
Visitors: 1096