View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0050_low_1 (Length: 320)
Name: NF0050_low_1
Description: NF0050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0050_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 37844874 - 37845155
Alignment:
| Q |
30 |
cttttatgctataagcacttcagatactgtttggaagagtgaaataaattccttctcaagcttccaccataataactactttgataaattcaataacagg |
129 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844874 |
cttttatgctataagcacttaagatactgtttgaaagagtgaaataaattccttctcaagcttccaccataataactactttgataaattcaataacagg |
37844973 |
T |
|
| Q |
130 |
gtgatcctacctatcttgtggtagagagtgacagaacacttgcaacatttgcaattaatgccgtatgcactcacctcgggtgtgtcgtgccatttaatca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844974 |
gtgatcctacctatcttgtggtagagagtgacagaacacttgcaacatttgcaattaatgccgtatgcactcacctcgggtgtgtcgtgccatttaatca |
37845073 |
T |
|
| Q |
230 |
agctgagaagaagttcatctgcccctgccatggatctcagtacaatgaccaaggaagagttgtgagaggacctgctcctttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845074 |
agctgagaagaagttcatctgcccctgccatggatctcagtacaatgaccaaggaagagttgtgagaggacctgctcctttg |
37845155 |
T |
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