View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_1 (Length: 611)
Name: NF0051_low_1
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 35 - 517
Target Start/End: Complemental strand, 3724548 - 3724066
Alignment:
| Q |
35 |
atataactattaactacatcttttgttatttacaaatgtggtcatgacannnnnnnctctatgtttcttccgttgctccaaaggttgtaaagcctagctc |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3724548 |
atataactattaactacatcttttgttatttacaaatgtggtcatgacatttttttctctatgtttctttcgttgctccaaaggttgtaaagcctagctc |
3724449 |
T |
|
| Q |
135 |
caattacagtaaagtggaagtgttaaatacccataatgttgtcaagtaagccataccaatggttgtttgcattgaatctatttctatttgtatcaaataa |
234 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3724448 |
caattacagtaaagtggaagtgttaactacccagaatgttgtcaagtaagccataccaatggttgtttgcattgaatctatttctatttgtatcaaataa |
3724349 |
T |
|
| Q |
235 |
cgctaattctaaaaccattattgtacataaactgcaggaattcgagtaagactatcttctttggagttgaatcttaaatttgctttgatggctcatgcct |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3724348 |
cgctaattctaaaaccattattgtacataaactgcaggaattcgagtaagactatcttctctggagttgaatcttaaatttgctttgatggctcatgcct |
3724249 |
T |
|
| Q |
335 |
gtatttatggtcaatatttctgcatcaggaaaactagagagagttgaatcaactccaaggaaaaaatgtttcattgttatagggatcaatacagctttca |
434 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3724248 |
gtatttatggtcaatagttctgcatcaggaaaactagagagagttgaatcaactccaaggaaaaaatgtttcattgttatagggatcaatacagctttta |
3724149 |
T |
|
| Q |
435 |
gtagcaggaaacgaagagattctgttcgaggaacttggatgccacaaggtggttcaatgatatttcagtgtatccttgttttt |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3724148 |
gtagcaggaaacgaagagattctgttcgaggaacttggatgccacaaggtggttcaatgatatttcagtgtatccttgttttt |
3724066 |
T |
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