View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_10 (Length: 223)
Name: NF0051_low_10
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 27469979 - 27470098
Alignment:
| Q |
1 |
tttcgaggagggaaaggccaatgttgataagggtcgatattagagattaataggaaatgtgatttatttggcacacactaggcctgatgtggcatatgca |
100 |
Q |
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| T |
27469979 |
tttcgaggagggaaaggccaatgttgataagggtcgatattagagattaataggaaatgtgatttatttggcacacactaggcctgatgtggcatatgca |
27470078 |
T |
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| Q |
101 |
tagagtgtggtgaaccaatt |
120 |
Q |
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||||||||||||| |||||| |
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| T |
27470079 |
tagagtgtggtgagccaatt |
27470098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 39779423 - 39779476
Alignment:
| Q |
60 |
tgatttatttggcacacactaggcctgatgtggcatatgcatagagtgtggtga |
113 |
Q |
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| T |
39779423 |
tgatttatttggcacacactaggccagatttggcatatgcaataagtgtggtga |
39779476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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