View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_2 (Length: 454)
Name: NF0051_low_2
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 161 - 425
Target Start/End: Complemental strand, 16366962 - 16366697
Alignment:
| Q |
161 |
tttttcaaattattacc-atgtatatgtgtcaatgtttgtgtcgtattcagtattcgtgtccttgtcggtttttctaaatacaactcattagtgtaaaaa |
259 |
Q |
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| T |
16366962 |
tttttcaaattattactgatgtttatgtttcaatgtttgtgtcgtattcagtattcgtgtccttgtcggtttttctaaatacaactcattagtgtaaaaa |
16366863 |
T |
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| Q |
260 |
attgtgtagattgagtatcttaaatcaaatgtgcaggcacatcagttgaagctcaagtccgcggtaaaaggcaattgaagctcttagatcatggagaaac |
359 |
Q |
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| T |
16366862 |
attgtgtagattgagtatcttaaatcaaatgtgtaggcacatcagttgaagctcaagtccgcggtaaaaggcaattgaagctcttagatcatggggaaac |
16366763 |
T |
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| Q |
360 |
atatgagatgaattctcctaaccttttctttagaattcttccagttcctggtgctgattgggttgg |
425 |
Q |
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| T |
16366762 |
atatgagatgaattctcctaaccttttctttagaattcttccagttcctggtgctgattgggttgg |
16366697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 16367512 - 16367346
Alignment:
| Q |
6 |
acagaaaagaaggaaaacatagaaatcacatggtctcagcaacctgttcctaaattttatggtatatatcttgaacttttcttggatcataagtatttcc |
105 |
Q |
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| T |
16367512 |
acagataagaaggaaaacatagaaatcacatggtctcagcaacctgttcctaaattttatggtatatatcttgaacttttcttggatcataagtatttcc |
16367413 |
T |
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| Q |
106 |
atctcattcactt-------gcaatgaaatagaatatatcaatcatttccataagattctaatttttcaaa |
169 |
Q |
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| T |
16367412 |
atctcattcacttgcaagttgcaatgaaatagaatat----atcatttccataagattctaatttttcaaa |
16367346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 16355931 - 16355853
Alignment:
| Q |
347 |
atcatggagaaacatatgagatgaattctcctaaccttttctttagaattcttccagttcctggtgctgattgggttgg |
425 |
Q |
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||||||||||||||||||| ||||||||||| || || || | ||||||||||| ||| |||| | ||||||| |||| |
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| T |
16355931 |
atcatggagaaacatatgaaatgaattctccaaatctctttataagaattcttcctgttactggagttgattggattgg |
16355853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 52941295 - 52941373
Alignment:
| Q |
347 |
atcatggagaaacatatgagatgaattctcctaaccttttctttagaattcttccagttcctggtgctgattgggttgg |
425 |
Q |
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|||||||||| |||||||| ||||||| |||||| | || || ||| |||||||| |||||||| |||||||||||| |
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| T |
52941295 |
atcatggagagacatatgaaatgaattgtcctaatttcttattcagatttcttccaattcctggtattgattgggttgg |
52941373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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