View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_3 (Length: 422)
Name: NF0051_low_3
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 133 - 411
Target Start/End: Original strand, 43226582 - 43226860
Alignment:
| Q |
133 |
acaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttctaaaccacccacacgacggc |
232 |
Q |
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| T |
43226582 |
acaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattaaatatgcgatcaattctcatcttctaaaccacccacacgacggc |
43226681 |
T |
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| Q |
233 |
gtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaacta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43226682 |
gtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaacta |
43226781 |
T |
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| Q |
333 |
aaattcagccacctcatcacctccgtccacacctttgaaatcactcgacaatgaagaaaaagatgattggccgtttcat |
411 |
Q |
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| T |
43226782 |
aaattcagccacctcatcacctccgtccacaccttcgaaatcactcgacaatgaagaaaaagatgattggccgtttcat |
43226860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 26519601 - 26519547
Alignment:
| Q |
44 |
tcaggtttagctttaaccgtcgcaatatattcgctcggccatgtctctgctgctc |
98 |
Q |
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| T |
26519601 |
tcaggtttagctttaaccgtcgcaatatattcggtcggccatgtctctggtgctc |
26519547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 15623223 - 15623144
Alignment:
| Q |
214 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
293 |
Q |
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| T |
15623223 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15623144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 15647012 - 15646933
Alignment:
| Q |
214 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
293 |
Q |
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| T |
15647012 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15646933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 16256842 - 16256768
Alignment:
| Q |
138 |
atcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttc |
212 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| || || | ||| |||| | |||||||||||||||| |
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| T |
16256842 |
atcaccttgacttgatccaccatttcatcaaccccacaaactttgttattaaaaaccctatcatttctcatcttc |
16256768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 375
Target Start/End: Complemental strand, 655248 - 655107
Alignment:
| Q |
234 |
tgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaa |
333 |
Q |
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|||||||||||||| ||||| || |||||||| || |||| ||||| || ||||||| || ||||||| ||| || ||| | ||||||||| ||| |
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| T |
655248 |
tgccaaattaaccacgccccgcgcctaagcttctttgaccaaacctccctagcccaacaaataacatgaatgaacgggtttggaggggtgataaaattaa |
655149 |
T |
|
| Q |
334 |
aattcagccacctcatcacctccgtccacacctttgaaatca |
375 |
Q |
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|||||| |||| |||| |||| | |||||||||| ||||||| |
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| T |
655148 |
aattcaaccacttcattaccttcctccacaccttagaaatca |
655107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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