View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_4 (Length: 366)
Name: NF0051_low_4
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 38 - 355
Target Start/End: Complemental strand, 42233558 - 42233240
Alignment:
| Q |
38 |
ttcgtcaaaatggtcttcttactgctgatgcactcaacaaagctgatgaagaaactatcaaaaaactgatttaccctgtatgttctttggtagcttttga |
137 |
Q |
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| T |
42233558 |
ttcgtcaaaatggtcttcttactgctgatgcactcaacaaagctgatgaagaaactatcaaaaaacagatttaccctgtatgttctttggtagcttttga |
42233459 |
T |
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| Q |
138 |
tcaattaatttggatttg-tggaaaattaaagattccacttttgaaacttccagtatttctataagatgttagcgtgtcaatttattttatgtccttttt |
236 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42233458 |
tcaattaatttggatttggtggaaaattaaagattccacttttgaaacttccagtatttctataagatgttagcgtgtcaatttattttatgtccttttt |
42233359 |
T |
|
| Q |
237 |
gtgttttattaattgaatatctgtgcttatgcttttgggcattcttttctcaggttgggttttatataagaaaagctggtaacttgaagaaaattgctga |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42233358 |
gtgttttattaattgaatatctgtgcttatgcttttgggcattcttttctcaggttgggttttatataagaaaagctggtaacttgaagaaaattgctga |
42233259 |
T |
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| Q |
337 |
tatttgtctcactaagtat |
355 |
Q |
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||||||||||||||||||| |
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| T |
42233258 |
tatttgtctcactaagtat |
42233240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 25262068 - 25261988
Alignment:
| Q |
42 |
tcaaaatggtcttcttactgctgatgcactcaacaaagctgatgaagaaactatcaaaaaactgatttaccctgtatgttc |
122 |
Q |
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|||||| | ||| |||||| |||||||| ||||||| |||||||||||||| || ||||| |||||||||| |||||||| |
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| T |
25262068 |
tcaaaacgatctgcttactcctgatgcaatcaacaatgctgatgaagaaaccataaaaaagttgatttacccagtatgttc |
25261988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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