View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_5 (Length: 361)
Name: NF0051_low_5
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 1696460 - 1696135
Alignment:
| Q |
30 |
ttctgtttcgcattctttgtgcagnnnnnnntggtgaaccaatcagcaatccgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttt |
129 |
Q |
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| T |
1696460 |
ttctgtttcgcattctttgtgcagaaaaaaatggtgaaccaatcagcaattcgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttt |
1696361 |
T |
|
| Q |
130 |
tcagtatcatttcagtttattttaactttttctcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataatcgattttaga |
229 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1696360 |
tcagtatcatttcagtttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataatcgattttgga |
1696261 |
T |
|
| Q |
230 |
agtctttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttgtgaaatttgaatgcagggaatgt |
329 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696260 |
agtttttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttgtgaaatttgaatgcagggaatgt |
1696161 |
T |
|
| Q |
330 |
tatctcgtttggactgttcatctcac |
355 |
Q |
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||||||||||||||||||| |||||| |
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| T |
1696160 |
tatctcgtttggactgttcttctcac |
1696135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 81 - 348
Target Start/End: Complemental strand, 1685852 - 1685593
Alignment:
| Q |
81 |
cgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgc |
180 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
1685852 |
cgtaccattgttggtatcataggtttgttaatcacttcttcttctcttttcagt-----------ttattttaactttttatcataatcgattatcatgc |
1685764 |
T |
|
| Q |
181 |
atgcatgcataaagtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1685763 |
atgcatgcataaagtataattttaactttttctgataatcgatttttgaagtttttagttcagttacgattgattttagctttttgtgttaatcgattaa |
1685664 |
T |
|
| Q |
281 |
tcatacatgtttctgattgat--ttttgtgaaa-tttgaatgcagggaatgttatctcgtttggactgttc |
348 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
1685663 |
tcatacatgtttctgattgatttttttctgaaattttgaatgaagggaatgttatctcgtttggactgttc |
1685593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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