View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0051_low_6 (Length: 331)
Name: NF0051_low_6
Description: NF0051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0051_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 45389855 - 45390006
Alignment:
| Q |
104 |
cagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389855 |
cagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaata |
45389954 |
T |
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| Q |
204 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatgat |
255 |
Q |
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| T |
45389955 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatgat |
45390006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 45374697 - 45374848
Alignment:
| Q |
104 |
cagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaata |
203 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45374697 |
cagacctagtatgtttccatgaactttcatcattagctcaggatgattgtacaagattctgacatatttcgtgtttcatgcagtgcttctttccacaata |
45374796 |
T |
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| Q |
204 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatgat |
255 |
Q |
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| T |
45374797 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatgat |
45374848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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