View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_high_2 (Length: 355)
Name: NF0052_high_2
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_high_2 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 43435292 - 43435632
Alignment:
| Q |
1 |
gcattatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaaga |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43435292 |
gcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggttatgaaaga |
43435391 |
T |
|
| Q |
101 |
gcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctaga |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435392 |
gcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctaga |
43435491 |
T |
|
| Q |
201 |
gttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatat |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43435492 |
gttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatat |
43435591 |
T |
|
| Q |
301 |
cgaggcagcttcaaaagaataagatgatggaggatgatgtc |
341 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||| |
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| T |
43435592 |
cgaggaagcttcaaaagaataagatgatggaggatgctgtc |
43435632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 3 - 334
Target Start/End: Original strand, 43426789 - 43427120
Alignment:
| Q |
3 |
attatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaagagc |
102 |
Q |
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||||||||| ||||||||||||| || | ||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
43426789 |
attatttcagggtctgattgggacaatgagattgagaatgaactcgagaaggttaaaattcaactttcggacaatttcgtgattagggttatgaaagagc |
43426888 |
T |
|
| Q |
103 |
ttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagt |
202 |
Q |
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||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43426889 |
ttcgaaatagtcctttaaaggcttataagttttttcattgggttggaaagcaatctggttatctacagaatacagtgacttataatgcagttgctagagt |
43426988 |
T |
|
| Q |
203 |
tcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcg |
302 |
Q |
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|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43426989 |
tcttcctagaatggagtcaattgagaagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcg |
43427088 |
T |
|
| Q |
303 |
aggcagcttcaaaagaataagatgatggagga |
334 |
Q |
| |
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|||||||||| ||| |||| |||||||||||| |
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| T |
43427089 |
aggcagcttctaaataataggatgatggagga |
43427120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 73 - 341
Target Start/End: Original strand, 43443558 - 43443826
Alignment:
| Q |
73 |
ataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
172 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43443558 |
ataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
43443657 |
T |
|
| Q |
173 |
tacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaa |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43443658 |
tacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaa |
43443757 |
T |
|
| Q |
273 |
ttggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgatgtc |
341 |
Q |
| |
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| T |
43443758 |
ttggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtc |
43443826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 67 - 336
Target Start/End: Original strand, 43422275 - 43422544
Alignment:
| Q |
67 |
tttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatca |
166 |
Q |
| |
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||||||||| ||| |||| ||||| |||||||||||||| |||| ||||||| ||| || |||||| |||||||||||||||||||||||||||| |
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| T |
43422275 |
tttcggatagttttgtgatacgggttttgaaagagcttcgaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttatca |
43422374 |
T |
|
| Q |
167 |
acagaatacagtgacttataatgcagttgctagagttcttccaaggatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggt |
266 |
Q |
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||| ||| | |||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
43422375 |
acataatgctgtgacttacaatgcagttgctagagttcttgctaggatggattcaattgaggagttttggagtattcttgcggagatgaagagtgtgaat |
43422474 |
T |
|
| Q |
267 |
catgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatg |
336 |
Q |
| |
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|||||||||| |||||||||| || |||||| | | |||| || ||||||| |||||||| |||||| |
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| T |
43422475 |
tatgaattggagattgatacttatatgaagataacaatgcagtttgtaaagaatcagatgatgaaggatg |
43422544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 20787 - 21095
Alignment:
| Q |
13 |
ggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaagagcttcgagaaag |
112 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| || |
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| T |
20787 |
ggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattc---tttcggataatttcgtgattagggtcatgaaagagcttcgagatag |
20883 |
T |
|
| Q |
113 |
tcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaagg |
212 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
20884 |
tcctttaaaggcttataagttttttcattgggttggaaagaaatctagttatcaacggaatacagttacttataatgcagttgctagagttcttcctaga |
20983 |
T |
|
| Q |
213 |
atggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttc |
312 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
20984 |
gtggagtcaattgaagagttttggagtattcttgaggagacgaagagtgtctgtcatgaattggag-----------------gatatcgaggcagcttc |
21066 |
T |
|
| Q |
313 |
aaaagaataagatgatggaggatgatgtc |
341 |
Q |
| |
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|||||||||||||||||||||||| |||| |
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| T |
21067 |
aaaagaataagatgatggaggatgttgtc |
21095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 112 - 331
Target Start/End: Complemental strand, 40186396 - 40186180
Alignment:
| Q |
112 |
gtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagttcttccaag |
211 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||| | | |
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| T |
40186396 |
gtcctttaaaggcttacaagttttttcattgggttgggaagcaatctggttatcaacataataccgtgacttacaattatgttgcaagagttcttgctaa |
40186297 |
T |
|
| Q |
212 |
gatggagtcaattgaggagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagctt |
311 |
Q |
| |
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|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
40186296 |
gatggactcaattgaggagttttggagta---tcgaggagatgaagagtgtcggtcatgaattggatctcaatacttccataaagatatcgaggcagctt |
40186200 |
T |
|
| Q |
312 |
caaaagaataagatgatgga |
331 |
Q |
| |
|
||| |||||| ||||||||| |
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|
| T |
40186199 |
caagagaataggatgatgga |
40186180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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