View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_high_6 (Length: 267)

Name: NF0052_high_6
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_high_6
NF0052_high_6
[»] chr2 (2 HSPs)
chr2 (2-267)||(45411286-45411551)
chr2 (11-267)||(27355618-27355874)
[»] chr6 (2 HSPs)
chr6 (86-244)||(7552123-7552281)
chr6 (94-153)||(8849968-8850027)
[»] chr8 (2 HSPs)
chr8 (33-220)||(14806232-14806416)
chr8 (91-170)||(10280970-10281049)
[»] chr3 (1 HSPs)
chr3 (96-218)||(55212258-55212377)
[»] chr5 (1 HSPs)
chr5 (35-116)||(31608527-31608605)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 45411551 - 45411286
Alignment:
2 gaggagcagcacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgtt 101  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45411551 gaggatcatcacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgtt 45411452  T
102 actagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagt 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
45411451 actagctagaagttagttggataaggatgagatagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttagttagaagt 45411352  T
202 tttgatttgtgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaattt 267  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
45411351 tttgatttgtgtatataaattatgtattgcactgagaaaatgtatcatataagttgaataaaattt 45411286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 27355618 - 27355874
Alignment:
11 cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27355618 cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag 27355717  T
111 aagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
27355718 aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagaaaccatggttagttagaagttttgatttg 27355817  T
211 tgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaattt 267  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
27355818 tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaattt 27355874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 7552123 - 7552281
Alignment:
86 ttattattagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatc 185  Q
    |||||||||  |||||| | |||||||||| || |||||||||||||||||||| ||||| |||||||||| |||   ||||||||   ||||||||| |    
7552123 ttattattaaattgttattggctagaagttggtcggataaggatgagttagttagttaaaaattaactcaccatagaatttacttgcgagtcaagtaacc 7552222  T
186 atggttaggtagaagttttgatttgtgtatataagttatgcattgcactgagaaaatgt 244  Q
    || ||||| ||||||||||||||||||||||||||| ||| |||| | |||||| ||||    
7552223 atagttagttagaagttttgatttgtgtatataagtgatgtattgtattgagaatatgt 7552281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 8850027 - 8849968
Alignment:
94 agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaact 153  Q
    |||| ||||||||||| ||||||||||||||||  ||||||||||| || ||||||||||    
8850027 agttagttactagctaaaagttagttggataagattgagttagttagtttaagattaact 8849968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 14806416 - 14806232
Alignment:
33 taatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagttagttggataaggatgag 132  Q
    ||||||| ||||||||||| |||||| | |||||||||||||  | ||| ||||||  |   |||||||||  ||||||||||||||||||||||| ||     
14806416 taatctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaa---gtttgttacaggctagaagttagttggataaggacgaa 14806320  T
133 ttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttgtgtatataag 220  Q
    ||||||| ||| |||||||||||| |||   || | ||||||| |||  || ||| |||||  ||||||||| |||||||||||||||    
14806319 ttagttagttagagattaactcactatagatttaatttggtggacaaacaaccatagttagtcagaagttttaatttgtgtatataag 14806232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 10281049 - 10280970
Alignment:
91 attagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttactt 170  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||||  ||| ||||||||||||  || |||||||||    
10281049 attagtttgtgactatctagaagttagttagagaaggatgagttagttggttagagattaactcaccttagggtttactt 10280970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 55212258 - 55212377
Alignment:
96 tttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggt 195  Q
    ||||||||||| |||||||| ||| ||||||||||||||||    ||| |||||| |  |  |||||||||||||||| ||||||||| |||| |||  |    
55212258 tttgttactagatagaagttggtttgataaggatgagttag----ttagagattagcaaatcatatggtttacttggtagtcaagtaaccatgattaatt 55212353  T
196 agaagtttt-gatttgtgtatata 218  Q
    | ||||||| ||||||||||||||    
55212354 ataagttttcgatttgtgtatata 55212377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 31608605 - 31608527
Alignment:
35 atctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagtta 116  Q
    |||||||||||||||||  ||||| |||||  ||||||||||| ||  |||   ||||||||||||| ||||||||||||||    
31608605 atctagtgtatagttgttttgatgtatatatattagattagcacaaatttg---ttattagtttgttcctagctagaagtta 31608527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University