View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_low_11 (Length: 302)

Name: NF0052_low_11
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_low_11
NF0052_low_11
[»] chr7 (1 HSPs)
chr7 (74-302)||(45000282-45000511)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 74 - 302
Target Start/End: Complemental strand, 45000511 - 45000282
Alignment:
Q  74 atcatcacatgaatgtaataaatggaattaattgtgcatgaggtagtagtaccaattatgtttcaactaccccaaatttatagatcaaattgttttacta 173  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45000511 atcaacacatgaatgtaataaatggaattaattgtgcatgaggtagtagtaccaattatgtttcaactaccccaaatttatagatcaaattgttttacta 45000412  T
Q  174 ggactactatatataactctccatcatgttcataggtcttcattcctatagcatacagtatatctcactaatgcaccttgttacgagc-ttgctttcaac 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45000411 ggactactatatataactctccatcatgttcataggtcttcattcctatagcatacagtatatctcactaatgcaccttgttacgagctttgctttcaac 45000312  T
Q  273 aggactaggtaaactttttatccagaaagc 302  Q
    |||||||||||||||| |||||||||||||    
T  45000311 aggactaggtaaacttgttatccagaaagc 45000282  T

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