View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_14 (Length: 273)
Name: NF0052_low_14
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 27250476 - 27250705
Alignment:
| Q |
6 |
aagcaggactgctagccgatgtatatcattatgattatgatgtctacttatgtttaattctaatagagtgatatcattcggatatacttgtcagtgtgtc |
105 |
Q |
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| T |
27250476 |
aagcaggagtgctagccgatgtatattattatgattatgatgtctacttatgtttaattctaatagagtgatatcattcggatatacttgtcagtgtgtc |
27250575 |
T |
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| Q |
106 |
catacagaaagatgtgtcatgtatgcctgacataaacaataatatggaatgattatatcattcataaatgaacattcagtcagaaatgatgtttaacgta |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27250576 |
catacagaaagatgtgtcatgtatgcctaacataaacaataatatggaatgattatatcattcagaaatgaacattcagtcagaaatgatgtttaacgta |
27250675 |
T |
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| Q |
206 |
tggtttatgtgccatgaacaacaggttctg |
235 |
Q |
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| T |
27250676 |
tggtttatgtgccatgaacaatagggtctg |
27250705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 21194703 - 21194923
Alignment:
| Q |
6 |
aagcaggactgctagccgatgtatatcattatgattatgatgtctacttatgtttaattctaatagagtgatatcattcggatatacttgtcagtgtgtc |
105 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21194703 |
aagcaggagtgctagccgatgtatattattatgattatgatgtctaattatgtttaattctaatagagtgatatcattcggatatacttgtcagtgtgtc |
21194802 |
T |
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| Q |
106 |
catacagaaagatgtgtcatgtatgcctgacataaacaataatatggaatgattatatcattcataaatgaacattcagtcagaaatgatgtttaacgta |
205 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21194803 |
catacagaaagatgtgtcatgtatgcctaacataaacaataatatggaaagattatatcattcaaaaatgaacattcagtcagaaatgatgtttaacgta |
21194902 |
T |
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| Q |
206 |
tggtttatgtgccatgaacaa |
226 |
Q |
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| T |
21194903 |
tggtttatgtgccatgaacaa |
21194923 |
T |
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