View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_16 (Length: 267)
Name: NF0052_low_16
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 45411551 - 45411286
Alignment:
| Q |
2 |
gaggagcagcacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgtt |
101 |
Q |
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| T |
45411551 |
gaggatcatcacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgtt |
45411452 |
T |
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| Q |
102 |
actagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagt |
201 |
Q |
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| T |
45411451 |
actagctagaagttagttggataaggatgagatagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttagttagaagt |
45411352 |
T |
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| Q |
202 |
tttgatttgtgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaattt |
267 |
Q |
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| T |
45411351 |
tttgatttgtgtatataaattatgtattgcactgagaaaatgtatcatataagttgaataaaattt |
45411286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 27355618 - 27355874
Alignment:
| Q |
11 |
cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
110 |
Q |
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| T |
27355618 |
cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
27355717 |
T |
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| Q |
111 |
aagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttg |
210 |
Q |
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| T |
27355718 |
aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagaaaccatggttagttagaagttttgatttg |
27355817 |
T |
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| Q |
211 |
tgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaattt |
267 |
Q |
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| T |
27355818 |
tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaattt |
27355874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 7552123 - 7552281
Alignment:
| Q |
86 |
ttattattagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatc |
185 |
Q |
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| T |
7552123 |
ttattattaaattgttattggctagaagttggtcggataaggatgagttagttagttaaaaattaactcaccatagaatttacttgcgagtcaagtaacc |
7552222 |
T |
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| Q |
186 |
atggttaggtagaagttttgatttgtgtatataagttatgcattgcactgagaaaatgt |
244 |
Q |
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| T |
7552223 |
atagttagttagaagttttgatttgtgtatataagtgatgtattgtattgagaatatgt |
7552281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 8850027 - 8849968
Alignment:
| Q |
94 |
agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaact |
153 |
Q |
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| T |
8850027 |
agttagttactagctaaaagttagttggataagattgagttagttagtttaagattaact |
8849968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 14806416 - 14806232
Alignment:
| Q |
33 |
taatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagttagttggataaggatgag |
132 |
Q |
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| T |
14806416 |
taatctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaa---gtttgttacaggctagaagttagttggataaggacgaa |
14806320 |
T |
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| Q |
133 |
ttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttgtgtatataag |
220 |
Q |
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| T |
14806319 |
ttagttagttagagattaactcactatagatttaatttggtggacaaacaaccatagttagtcagaagttttaatttgtgtatataag |
14806232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 10281049 - 10280970
Alignment:
| Q |
91 |
attagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttactt |
170 |
Q |
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| T |
10281049 |
attagtttgtgactatctagaagttagttagagaaggatgagttagttggttagagattaactcaccttagggtttactt |
10280970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 55212258 - 55212377
Alignment:
| Q |
96 |
tttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggt |
195 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||| ||| |||||| | | |||||||||||||||| ||||||||| |||| ||| | |
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| T |
55212258 |
tttgttactagatagaagttggtttgataaggatgagttag----ttagagattagcaaatcatatggtttacttggtagtcaagtaaccatgattaatt |
55212353 |
T |
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| Q |
196 |
agaagtttt-gatttgtgtatata |
218 |
Q |
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| T |
55212354 |
ataagttttcgatttgtgtatata |
55212377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 31608605 - 31608527
Alignment:
| Q |
35 |
atctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagtta |
116 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||| || ||| ||||||||||||| |||||||||||||| |
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| T |
31608605 |
atctagtgtatagttgttttgatgtatatatattagattagcacaaatttg---ttattagtttgttcctagctagaagtta |
31608527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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