View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_low_17 (Length: 264)

Name: NF0052_low_17
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_low_17
NF0052_low_17
[»] chr8 (4 HSPs)
chr8 (35-229)||(45255879-45256073)
chr8 (48-229)||(23680057-23680238)
chr8 (48-229)||(17658726-17658907)
chr8 (44-223)||(26031393-26031572)
[»] chr5 (8 HSPs)
chr5 (44-229)||(6049118-6049303)
chr5 (44-229)||(4923129-4923314)
chr5 (44-223)||(20208779-20208958)
chr5 (39-229)||(4415755-4415945)
chr5 (65-229)||(7000846-7001010)
chr5 (81-223)||(40090240-40090382)
chr5 (100-229)||(34874559-34874684)
chr5 (80-113)||(41388750-41388783)
[»] chr1 (9 HSPs)
chr1 (44-229)||(47106740-47106925)
chr1 (49-229)||(17707891-17708071)
chr1 (44-229)||(10711221-10711406)
chr1 (71-223)||(41061231-41061383)
chr1 (39-229)||(30110980-30111169)
chr1 (149-223)||(26720600-26720674)
chr1 (44-112)||(26720673-26720741)
chr1 (33-102)||(21335418-21335487)
chr1 (39-102)||(28098016-28098079)
[»] chr4 (11 HSPs)
chr4 (44-229)||(18106616-18106801)
chr4 (48-229)||(53487017-53487198)
chr4 (39-229)||(30273867-30274057)
chr4 (39-229)||(34322374-34322564)
chr4 (44-229)||(42778133-42778318)
chr4 (44-228)||(20395492-20395676)
chr4 (44-229)||(53779940-53780125)
chr4 (44-229)||(29213041-29213226)
chr4 (48-229)||(10563373-10563554)
chr4 (94-175)||(461855-461936)
chr4 (47-103)||(19114457-19114513)
[»] chr2 (5 HSPs)
chr2 (44-229)||(2999808-2999993)
chr2 (44-229)||(1379977-1380162)
chr2 (33-102)||(11027122-11027191)
chr2 (80-113)||(2760375-2760408)
chr2 (90-123)||(40990536-40990569)
[»] chr3 (10 HSPs)
chr3 (44-229)||(19222020-19222203)
chr3 (44-229)||(33121377-33121562)
chr3 (46-223)||(26845772-26845945)
chr3 (48-228)||(47537164-47537344)
chr3 (48-223)||(50544122-50544297)
chr3 (167-229)||(25341529-25341591)
chr3 (39-102)||(43121721-43121784)
chr3 (39-96)||(23874170-23874227)
chr3 (39-202)||(23818499-23818662)
chr3 (39-87)||(48191836-48191884)
[»] scaffold0179 (1 HSPs)
scaffold0179 (44-213)||(7439-7608)
[»] chr6 (5 HSPs)
chr6 (48-229)||(9199316-9199497)
chr6 (44-229)||(17079251-17079436)
chr6 (44-228)||(11060919-11061103)
chr6 (44-175)||(17873878-17874009)
chr6 (44-113)||(18051509-18051578)
[»] chr7 (5 HSPs)
chr7 (44-229)||(29113609-29113794)
chr7 (48-229)||(34231594-34231775)
chr7 (44-223)||(4077176-4077355)
chr7 (44-223)||(7458731-7458910)
chr7 (182-223)||(28060478-28060519)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-223)||(182030-182209)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 45255879 - 45256073
Alignment:
Q  35 catcatcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgact 134  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45255879 catcaccaggtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgact 45255978  T
Q  135 cagaagcttctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45255979 cagaagcttctttgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 45256073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 23680238 - 23680057
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    ||||||| || ||| | ||||| |||||||||||||||||||| ||||||||||||| ||||||||| | |||||||||| | ||  ||||||||||| |    
T  23680238 cgttgaaagtttctttatttgcgtggaggttgcttcgtgatagtttgcctactaaagttaatttggttcaaagaagggtgcttgatacagaagcttctat 23680139  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||| |||||    
T  23680138 gtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttaacttgtgatgctttttcatctttatggcctctg 23680057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 17658907 - 17658726
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||| ||| | ||||| |||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||| | ||  || |||||||  |    
T  17658907 cgttgaaggtttctttatttgcgtggaggttgcttcgagatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacaaaagcttccat 17658808  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||  || |||||||||| |||||| |||||||| |||||    
T  17658807 gtgtgtttcagattgtggcataagtgaaacggcgcaacatttgttcctaacttgtgatgcgttttcatctttatggcctctg 17658726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 26031572 - 26031393
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    ||||| ||||| |||||| | |||  |||||||||||| ||| ||||||||||||||||||||||||||| ||  |||| |||||| || ||||||||||    
T  26031572 gtgccattgaaagtctctttatttatttggaggttgctccgtaatagattgcctactaaagataatttggcccttagaaaggtgattgattcagaagctt 26031473  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    |  |||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||  |||||  ||||||||    
T  26031472 cgatgtgtgtttctgattgtggcatgagagaaacggcgcaacatttgtttttatcctgtgatgttttttcttctttatgg 26031393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 6049303 - 6049118
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6049303 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgataggttgcctactaaagataatttggtccgaagaagggtgatcgacacagaagctt 6049204  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049203 ctttgtgtgtttcagattgtggcatgagtgaaacggcacaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 6049118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 4923314 - 4923129
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||||||||||| || ||||||||||    
T  4923314 gtgccgttgaaggtctctttatttgcttggaggttgctacgtgatagattgtctaataaagataatttggtccttagaagggtgattgattcagaagctt 4923215  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |  |||||||| |||||    
T  4923214 cgatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttttatcttgtgatgcttttgcttctttatggcctctg 4923129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 20208779 - 20208958
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    ||||||||||| |||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||| || ||||||||||    
T  20208779 gtgccgttgaaagtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaagctt 20208878  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    | |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||  ||||||||    
T  20208879 cgttgtgtgtttcagattgtggcatgagagaaacggcgcaacatttatttttatcttgtgatgctttttcttctttatgg 20208958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 4415755 - 4415945
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcaga 138  Q
    |||| |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||| | | |||| ||||| | ||||||||    
T  4415755 atcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttgattcaaagacgggtgcttgactcaga 4415854  T
Q  139 agcttctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||| |||||||||||||||||||||| |||||| |  |||||||||||||| |||||||||| || |||||| |||| |||||||||    
T  4415855 agcttctctgtgtgtttcagattgtggcattagtgaaacaacgcaacatttgtttctatcttgtgacgctttttcatctttttggtctctg 4415945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 7000846 - 7001010
Alignment:
Q  65 tttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttctttgtgtgtttcagattgtg 164  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||||| | |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  7000846 tttgcgtggaggttgcttcgtgatagattgcctactaaggttaatttggttcaaagaagggtgcttgactcagaagcttctctgtgtgtttcagattgtg 7000945  T
Q  165 gcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||| |||  |||||||||||| || |||||||| | ||||||||||||||| |||||    
T  7000946 gcatgagtgaaacggtacaacatttgtttctaacttgtgataccttttcacctttatggcctctg 7001010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 40090382 - 40090240
Alignment:
Q  81 ttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttctttgtgtgtttcagattgtggcatgagtgaagcggc 180  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| ||| | ||||||||| |||||||||   |||||||| |  ||||| ||||    
T  40090382 ttcgtgatagattgcctactaaagttaatttggtccaaagaagggtgattgacaccgaagcttctatgtgtgttttttattgtggcttttgtgaatcggc 40090283  T
Q  181 gcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    |||||| |||||||||||||||||| | |||||| ||||||||    
T  40090282 gcaacacttgtttttatcttgtgataccttttcatctttatgg 40090240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 34874559 - 34874684
Alignment:
Q  100 taaagataatttggtccgaagaagggtgatcgactcagaagcttctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatct 199  Q
    ||||| ||||||||| | ||||||| || | ||  || |||||||| ||||||||| ||||||| || |||||||| ||||||||||||| |    | ||    
T  34874559 taaagttaatttggttcaaagaaggatgcttgatacaaaagcttctatgtgtgttttagattgtcgcttgagtgaaacggcgcaacatttct----aact 34874654  T
Q  200 tgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||| |||||||| |||||    
T  34874655 tgtgatgcattttcatctttatggcctctg 34874684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 41388783 - 41388750
Alignment:
Q  80 cttcgtgatagattgcctactaaagataatttgg 113  Q
    |||||||||||||||||| |||||||||||||||    
T  41388783 cttcgtgatagattgcctgctaaagataatttgg 41388750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 47106740 - 47106925
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  47106740 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgacatagaagctt 47106839  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  47106840 ctttgtgtgtttcaaattgtggcatgagtgaaacggcgcaacatttgattttatcttgtgatgcattttcacctttatgggctctg 47106925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 17708071 - 17707891
Alignment:
Q  49 gttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttctttg 148  Q
    ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||| | |||| |||||||||||||    
T  17708071 gttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgacttagaagcttctttg 17707972  T
Q  149 tgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| || |||||| |||||||| |||||    
T  17707971 tgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttatggcctctg 17707891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 10711221 - 10711406
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||| |||| |||| | |||| ||||| | ||| |||||||||    
T  10711221 gtgccgttgaaggtttctttattttcttagaggttgcttcgtgatagattgcctactaaagttaatatggttcaaagatgggtgcttgacacagaagctt 10711320  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |  ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||| |||||    
T  10711321 ccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatctttatggcctctg 10711406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 41061231 - 41061383
Alignment:
Q  71 tggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttctttgtgtgtttcagattgtggcatga 170  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||| || |||||||||||  |||||||||||| |||||||||||    
T  41061231 tggaggttgcttcgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaagcttcgatgtgtgtttcagtttgtggcatga 41061330  T
Q  171 gtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    | ||| ||||||||||||||||||||||||||||||| |||||  ||||||||    
T  41061331 gagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatgg 41061383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 30110980 - 30111169
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcaga 138  Q
    |||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||  |||||||  | |||| ||||| | ||| ||      
T  30110980 atcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagtcaatttggctcaaagacgggtgcttgacacaag 30111079  T
Q  139 agcttctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||||||||| ||||||||| |||||  |||||||||||||||| ||||||||||||  |||||| |||||||| |||||    
T  30111080 agcttctttgtgtgtttcagactgtggcatgtgtgaaaaggcgcaacatttgtttctatcttgtgatg-tttttcatctttatggcctctg 30111169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 26720674 - 26720600
Alignment:
Q  149 tgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  ||||||||    
T  26720674 tgtgtttcagattgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatgg 26720600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 26720741 - 26720673
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttg 112  Q
    ||||||||||| |||||| | |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  26720741 gtgccgttgaaagtctctttatttgcttgtaggttgctacgtaatagattgcctactaaagataatttg 26720673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 21335418 - 21335487
Alignment:
Q  33 gacatcatcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaa 102  Q
    ||||| |||| |||||||||||||||||| | |||||||||||||| ||||| || |||||||| |||||    
T  21335418 gacataatcaggtgccgttgaaggtctctatctttgcttggaggtttcttcgggacagattgccaactaa 21335487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 28098016 - 28098079
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaa 102  Q
    |||| |||||||||||||| ||| | ||||| | ||||||||||||||| |||||||| |||||    
T  28098016 atcaggtgccgttgaaggtttctatctttgcctagaggttgcttcgtgacagattgccaactaa 28098079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 18106616 - 18106801
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||| | || ||||||||||    
T  18106616 gtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgattcagaagctt 18106715  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||| |||||| |||||||| |||||    
T  18106716 ctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgttttcatctttatggcctctg 18106801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 53487017 - 53487198
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| |||||||||   |||| ||||| | |||||||||||||||||    
T  53487017 cgttgaaggtttctttatttgcttggaggttgcttcgagatagattgcctactaaagctaatttggttgaaagacgggtgcttgactcagaagcttcttt 53487116  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  53487117 gtgtgtttctgattgtggcatgtgtgaaacggcgcaacatttgtttctatcttgtgatgctttttcacctttatggcctctg 53487198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 30273867 - 30274057
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcaga 138  Q
    |||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| ||| ||||| ||||||||| | |||| ||||| | |||| |||    
T  30273867 atcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgtctattaaagctaatttggttcaaagacgggtgcttgacttaga 30273966  T
Q  139 agcttctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| || |||||| |||||||| |||||    
T  30273967 agcttctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttatggcctctg 30274057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 34322374 - 34322564
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcaga 138  Q
    |||| ||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||| | | ||||||    
T  34322374 atcaggtgtcgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgtctcaga 34322473  T
Q  139 agcttctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| || |||||| |||| |||||||||    
T  34322474 agcttctctgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttttggtctctg 34322564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 42778318 - 42778133
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||||||| ||||||||| | |||| ||||| | |||||||||||||    
T  42778318 gtgccgttgaaggtttctttatttgcttggaggctacttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgactcagaagctt 42778219  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    | |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||| | |||||| |||||    
T  42778218 cattgtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcctctg 42778133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 20395676 - 20395492
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||| | ||  |||||||||    
T  20395676 gtgccgttgaaggtttctttatttgcttggaggttgcttcatgatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacagaagctt 20395577  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctct 228  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||| |||||| |||| ||| ||||    
T  20395576 ctatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctttttcatctttttggcctct 20395492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 53780125 - 53779940
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||| |||| |||||||||||  ||| |||| || ||| ||||||||     
T  53780125 gtgccgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaaaagttaatttggtccatagacgggtaattgacacagaagctg 53780026  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    || |||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||  |||||  |||||||| |||||    
T  53780025 ctatgtgtgttacggattgtggcatgagtgaaacggcgcaacatttgtttttatcatgtgatgttttttcttctttatggcctctg 53779940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 29213041 - 29213226
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||| |||| |||||||||||  ||| | || || ||| ||||||||     
T  29213041 gtgccgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaaaagttaatttggtccatagacgagtaattgacacagaagctg 29213140  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    || |||||||| | |||| ||||||||||||| |||||||||||||||||||||  |||||||  |||||  |||||||| |||||    
T  29213141 ctatgtgtgttacggattctggcatgagtgaaacggcgcaacatttgtttttattgtgtgatgttttttcttctttatggcctctg 29213226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 10563373 - 10563554
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||| ||| | ||||||||| ||||||||||||||||||||||||| | || |||||||||||  ||| |||| || ||| | |||||  || |    
T  10563373 cgttgaaggtatctttatttgcttggcggttgcttcgtgatagattgcctacaatagttaatttggtccatagacgggtaattgacactgaagcggctat 10563472  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||| | |||||||||||||||||| || || | |||||||||||||| |||||||  |||||  |||||||| |||||    
T  10563473 gtgtgttacggattgtggcatgagtgaaacgacgtagcatttgtttttatcgtgtgatgttttttcttctttatggcctctg 10563554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 461936 - 461855
Alignment:
Q  94 gcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttctttgtgtgtttcagattgtggcatgagtgaa 175  Q
    ||||||||||| ||||||||| | |||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||    
T  461936 gcctactaaagctaatttggttcaaagacgggtgcttgacttagaagcttctttgtgtgtttcagattgtggcatgagtgaa 461855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 19114513 - 19114457
Alignment:
Q  47 ccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaa 103  Q
    ||||||||||| || ||||| ||||||||| | ||||||||| | ||||||||||||    
T  19114513 ccgttgaaggtatcacttttcgcttggaggcttcttcgtgatcgtttgcctactaaa 19114457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 2999808 - 2999993
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||| | || ||||||||||    
T  2999808 gtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgattcagaagctt 2999907  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||| |||||| |||||||| |||||    
T  2999908 ctttgtgtgtttcagattgtggcatgagtgaaacagcgcaacgtttgtttctatcttgtgatgcgttttcatctttatggcctctg 2999993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 1380162 - 1379977
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||||||| ||||||||| | |||| ||||| | |||||||||||||    
T  1380162 gtgccgttgaaggtttctttatttgcttggaggctacttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgactcagaagctt 1380063  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| | |||||| |||||    
T  1380062 cattgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcctctg 1379977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 11027191 - 11027122
Alignment:
Q  33 gacatcatcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaa 102  Q
    ||||| |||| |||||||||||||| ||| | ||||| ||||||||||||| |||||| ||||| |||||    
T  11027191 gacataatcaggtgccgttgaaggtttctttctttgcgtggaggttgcttcatgataggttgccaactaa 11027122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 2760375 - 2760408
Alignment:
Q  80 cttcgtgatagattgcctactaaagataatttgg 113  Q
    ||||||||| ||||||||||||||||||||||||    
T  2760375 cttcgtgatcgattgcctactaaagataatttgg 2760408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 40990536 - 40990569
Alignment:
Q  90 gattgcctactaaagataatttggtccgaagaag 123  Q
    ||||||||||||||||||||||||| ||||||||    
T  40990536 gattgcctactaaagataatttggtgcgaagaag 40990569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 19222203 - 19222020
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||| ||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||| |||||| ||| |||||||||    
T  19222203 gtgctgttgaaggtctctttatttgcttggaggtttcttcgtg-tagattgcctactaaagttaatttggtccaaagaatggtgattgacacagaagctt 19222105  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    || |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  19222104 ctatgtgtgtttcagattgtgccatgagtgaaacggcgc-acatttgtttttatcttgtgatgcattttcatctttatggcctctg 19222020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 33121377 - 33121562
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||| | || ||||||||||    
T  33121377 gtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgggtgcttgattcagaagctt 33121476  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||| |||||||| |||||    
T  33121477 ctttgtgtgtctcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgatgcattctcatctttatggcctctg 33121562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 26845945 - 26845772
Alignment:
Q  46 gccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttct 145  Q
    ||||||||||||||||    |||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||| || |||||||||||     
T  26845945 gccgttgaaggtctct----ttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgattcagaagcttcg 26845850  T
Q  146 ttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
     |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  ||||||||    
T  26845849 atgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttcttctttatgg 26845772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 47537344 - 47537164
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||| | ||  ||||||||||| |    
T  47537344 cgttgaaggtttctttatttgcttggaggttgcttcatgatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacagaagcttctat 47537245  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctct 228  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||| |||||| |||| ||| ||||    
T  47537244 gtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgtttctaacttttgatgctttttcatctttttggcctct 47537164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 50544297 - 50544122
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||| | ||| |||| |||||| |    
T  50544297 cgttgaaggtctctatatttgcttggaggttgcttcgtgatagattgcctactaaagtgaatttggtccaaagaagggtgctagacacagatgcttctat 50544198  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    ||||||||||||||||||| |  ||||| ||||||||||||| |||||||| |||||| | |||||| ||||||||    
T  50544197 gtgtgtttcagattgtggcttttgtgaaacggcgcaacatttatttttatcatgtgataccttttcatctttatgg 50544122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 25341529 - 25341591
Alignment:
Q  167 atgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25341529 atgagtgaaatggcgcaacatttgtttttatcttgtgatgcattttcacctttatgatctctg 25341591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 43121721 - 43121784
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaa 102  Q
    |||| |||||||||||||||||| | ||||| ||||||||||||||||| ||||| || |||||    
T  43121721 atcaggtgccgttgaaggtctctatctttgcctggaggttgcttcgtgacagattaccaactaa 43121784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 23874227 - 23874170
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcc 96  Q
    ||||||| || |||||||||||| ||||||| |||||| |||||||||||| ||||||    
T  23874227 atcaagtccctttgaaggtctctatttttgcgtggaggctgcttcgtgatatattgcc 23874170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 23818662 - 23818499
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcaga 138  Q
    |||| ||||||||||| |||||| | ||||| | ||||||||||||||| |||||||| |||||    || ||||| |  ||| |||| ||    |||||    
T  23818662 atcaggtgccgttgaaagtctctatctttgcctagaggttgcttcgtgacagattgccaactaagttcaacttggttcatagacgggttatttcttcaga 23818563  T
Q  139 agcttctttgtgtgtttcagattgtggcatgagtgaag-cggcgcaacatttgtttttatcttgt 202  Q
     |||||||||||||||||| | |||||| | |||| || |  |||||||||||||||||||||||    
T  23818562 ggcttctttgtgtgtttcaaagtgtggc-ttagtggagacatcgcaacatttgtttttatcttgt 23818499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 48191884 - 48191836
Alignment:
Q  39 atcaagtgccgttgaaggtctctctttttgcttggaggttgcttcgtga 87  Q
    |||| |||||||||||||  ||| | |||||||||||||||||||||||    
T  48191884 atcaggtgccgttgaaggcttctttatttgcttggaggttgcttcgtga 48191836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 7608 - 7439
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||| || | ||||||||    
T  7608 gtgccgttgaaggtctctttatttgcttggaggttgctacgtaatagattgcctactaaagataatttggtccttagaagggtgattgatttagaagctt 7509  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttc 213  Q
    |  |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  7508 cgatgtgtgtttcagtttgtggcatgagagaaacggcgcaacatttgtttttatcttgtgatgctttttc 7439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 9199316 - 9199497
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||| ||| | |||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||| ||||| | |||||||||||||| ||    
T  9199316 cgttgaaggtttctttatttgcttggaggttgcttcgtgatggattgcctactaaagctgatttggttcgaagacgggtgcttgactcagaagcttcatt 9199415  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||| | |||||| |||||    
T  9199416 gtgtgtttcagattgtggcatgagtgaaatggcgcaacatttgtttctatcttgtgatgctttttcatcgttatggcctctg 9199497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 17079251 - 17079436
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||| ||||||||| | |||| ||||| | | | |||||||||    
T  17079251 gtgccgttgaaggtttctctattttcttgaaggttgcttcgtgatagattgcccactaaagttaatttggttcaaagacgggtgcttgtcacagaagctt 17079350  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    || ||| |||||||| |||||||||||||||| |||||| |||||||||| ||||||||||||  |||||| |||||||| |||||    
T  17079351 ctatgtatgtttcaggttgtggcatgagtgaatcggcgcgacatttgtttctatcttgtgatgttttttcatctttatggcctctg 17079436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 11060919 - 11061103
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | ||||| |||||||| ||||| ||||||||||||||||||| ||||||||| | |||||||||| | ||  |||||||||    
T  11060919 gtgccgttgaaggtttctttatttgcatggaggttccttcgggatagattgcctactaaagttaatttggttcaaagaagggtgcttgatacagaagctt 11061018  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctct 228  Q
    |  ||||||||||||||||||||||||||||| ||||||||||||||||  |  |||||||||| |||||| |||||||| ||||    
T  11061019 ccatgtgtgtttcagattgtggcatgagtgaaacggcgcaacatttgttcctgacttgtgatgctttttcatctttatggcctct 11061103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 17873878 - 17874009
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | |||||| || ||||||||||||||||||||||||| |||| ||||||||| |  ||| |||| || ||| ||||||||     
T  17873878 gtgccgttgaaggtatctttatttgctcggcggttgcttcgtgatagattgcctacaaaagttaatttggtacatagacgggtaattgacacagaagctg 17873977  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaa 175  Q
    || | |||||| | ||||||||||||||||||    
T  17873978 ctatatgtgttacggattgtggcatgagtgaa 17874009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 18051509 - 18051578
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttgg 113  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  18051509 gtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgtccactaaagttaatttgg 18051578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 29113609 - 29113794
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| | ||| | ||||| |||||||    
T  29113609 gtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaaagctaatttggttcaaagacgagtgcttgactccgaagctt 29113708  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||| || |||||| |||| ||| |||||    
T  29113709 ctttgtgtgttttagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacgctttttcatctttttggcctctg 29113794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 34231775 - 34231594
Alignment:
Q  48 cgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagcttcttt 147  Q
    |||||||||| ||| | |||||||||||| |||||||||||||| |||||||||||| ||||||||| | |||| ||||| | |||| ||||||||||||    
T  34231775 cgttgaaggtttctttatttgcttggaggctgcttcgtgatagactgcctactaaagctaatttggttcaaagacgggtgcttgacttagaagcttcttt 34231676  T
Q  148 gtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatggtctctg 229  Q
    |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||  | |||||| |||||||| |||||    
T  34231675 gtgtgtttcagattgtggcatgagtgaaacagcgcaacatttgtttctatcttgtgacactttttcatctttatggcctctg 34231594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 4077355 - 4077176
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||  | |||||||    
T  4077355 gtgccgttgaaggtttctatttttgcttggaggttgcttcgtgatagattgcctactaaagacaatttggtccaaagaaggatgattgataccgaagctt 4077256  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    || |||||||||||||||||||| |  ||||| ||||||  ||||| ||||||||||||||| | |||||| | ||||||    
T  4077255 ctatgtgtgtttcagattgtggcttttgtgaaacggcgcggcatttatttttatcttgtgataccttttcatcattatgg 4077176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 7458731 - 7458910
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    ||||||||||| || ||| | ||||||||| ||||||||||||||||||||||||||||||  ||||||||||  ||| |||| || ||| | |||||      
T  7458731 gtgccgttgaaagtttctttatttgcttggcggttgcttcgtgatagattgcctactaaagtgaatttggtccatagacgggtaattgacactgaagcgg 7458830  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    || |||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||  |||||  ||||||||    
T  7458831 ctatgtgtgttacagattgtggcatgagcgaaacggcgcaacatttgtttttatcgtgtgatgttttttcttctttatgg 7458910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 28060519 - 28060478
Alignment:
Q  182 caacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    |||||||||||||||||||| ||||| |||||| ||||||||    
T  28060519 caacatttgtttttatcttgcgatgctttttcatctttatgg 28060478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 182209 - 182030
Alignment:
Q  44 gtgccgttgaaggtctctctttttgcttggaggttgcttcgtgatagattgcctactaaagataatttggtccgaagaagggtgatcgactcagaagctt 143  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |||| ||||| | |||   |||||||    
T  182209 gtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagactgcccactaaagttaatttggttcaaagacgggtgcttgacattgaagctt 182110  T
Q  144 ctttgtgtgtttcagattgtggcatgagtgaagcggcgcaacatttgtttttatcttgtgatgcattttcacctttatgg 223  Q
    || |||||||| ||||||||||||||| |||| | ||||||||||||||| | ||||||||||  |||||  ||||||||    
T  182109 ctatgtgtgttacagattgtggcatgaatgaaacagcgcaacatttgtttctttcttgtgatgttttttcttctttatgg 182030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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