View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_19 (Length: 259)
Name: NF0052_low_19
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 45411174 - 45411007
Alignment:
| Q |
1 |
aaggcactaaacatggagtagagaatttatgagt-aagtaa-gtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattat |
98 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45411174 |
aaggcactaaacatggagtagagaatttatgagttaagtaaagtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattat |
45411075 |
T |
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| Q |
99 |
gaaaatgaaatgttgaagaaaaataatcatgttaggaacatgcatctttggcgccaaaacaatgaaag |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45411074 |
gaaaatgaaatgttgaagaaaaataatcatgttaggaacatgcaactttggcgccaaaacaatgaaag |
45411007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 27355999 - 27356160
Alignment:
| Q |
1 |
aaggcactaaacatggagtagagaatttatgagtaagtaagtaataggcaaagacgacacattctaactgtattgcaaaaagaatgactatttattatga |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27355999 |
aaggcactaaacatggagtaaagaatttatgagtcagta----ataggcaaaaacgacacattctaactgtagtgcaaaaagaatgactatttattatga |
27356094 |
T |
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| Q |
101 |
aaatgaaatgttgaagaaaaataatcatgttaggaacatgcatctttggcgccaaaacaatgaaag |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27356095 |
aaatgaaatgttgaagaaaaataatcatgttaggaacatgcaactttggcgccaaaacaatgaaag |
27356160 |
T |
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