View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_2 (Length: 455)
Name: NF0052_low_2
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 194 - 445
Target Start/End: Complemental strand, 14588300 - 14588049
Alignment:
| Q |
194 |
gaatggcattttccattcgccaatttatctccttcctccaacgtttcaatcactcctcttttcacaattcatcaagaacaattgagtaaaatccctgaag |
293 |
Q |
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| T |
14588300 |
gaatggcattttccattcgccaatttatctccttcctccaacgtttcaatcactcctcttttcacaattcatcaagaacaattgagtaaaatccctgaag |
14588201 |
T |
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| Q |
294 |
ttaatgtttcaaatcagggttttgagaatacccttttggggaattttagtgaaaatggttataatgcaagttttctatctaacggggttgataaagttgg |
393 |
Q |
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| T |
14588200 |
ttaatgtttcaaatcagggttttgagaatacccttttggggaattttagtgaaaatggttataatgcaagttttctatctaacggggttgataaagttgg |
14588101 |
T |
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| Q |
394 |
aaacttttctgttgggaaaggtgaaattgatgagaatttgagtggttctgtg |
445 |
Q |
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| T |
14588100 |
aaacttttctgctgggaaaggtgaaattgatgagaatttgagtggttctgtg |
14588049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 14588443 - 14588351
Alignment:
| Q |
51 |
cttcaatggaatggaacaagagaataacattctcagaacccttttcatcacacagaacaaaagtgttatctggtttcactttaggtcttgttg |
143 |
Q |
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| T |
14588443 |
cttcaatggaatggaacaagagaataacattctcagaacccttttcatcacacagaacaaaagtgttatctggtttcactttaggtcttgttg |
14588351 |
T |
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