View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_low_21 (Length: 252)

Name: NF0052_low_21
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_low_21
NF0052_low_21
[»] chr8 (2 HSPs)
chr8 (30-241)||(11481020-11481231)
chr8 (194-232)||(9766107-9766145)
[»] chr1 (5 HSPs)
chr1 (194-241)||(19884736-19884783)
chr1 (194-237)||(2192120-2192163)
chr1 (194-237)||(25294258-25294301)
chr1 (194-241)||(38264651-38264698)
chr1 (194-238)||(17563116-17563160)
[»] chr6 (2 HSPs)
chr6 (194-237)||(34435133-34435176)
chr6 (194-237)||(8576501-8576544)
[»] chr4 (2 HSPs)
chr4 (194-237)||(41039084-41039127)
chr4 (195-241)||(51356934-51356980)
[»] chr3 (4 HSPs)
chr3 (192-241)||(21287864-21287913)
chr3 (194-237)||(4127751-4127794)
chr3 (194-241)||(13825659-13825706)
chr3 (193-237)||(25875041-25875085)
[»] chr5 (5 HSPs)
chr5 (193-237)||(39800738-39800782)
chr5 (193-237)||(40056733-40056777)
chr5 (194-237)||(23428985-23429028)
chr5 (193-235)||(33743048-33743090)
chr5 (196-237)||(39207432-39207473)
[»] scaffold0115 (1 HSPs)
scaffold0115 (194-237)||(21815-21858)
[»] chr2 (2 HSPs)
chr2 (194-241)||(13807323-13807370)
chr2 (193-237)||(42625348-42625392)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 11481020 - 11481231
Alignment:
Q  30 tatagaataaaattcatcctttaatctctagctgttggcaaaatttcgatgagactaaatatttactgctaagagtgaatatgacttagatttaagtctg 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11481020 tatagaataaaattcatcctttaatctctagttgttggcaaaatttcgatgagactaaatatttactgctaagagtgaatatgacttagatttaagtctg 11481119  T
Q  130 aaattttgatgttggtagtttatactcaagcattgaccaaaacttcatttggtctactcatttgtagggatgtaaatggaaattcatggatgcggataat 229  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||| |||||||||| |    
T  11481120 aaattttgatgttggtagtttatactcaaccattgaccaaaacttcatttgatctactcatttgtatggatgtaaatggatatccatagatgcggatagt 11481219  T
Q  230 gtgatatctgtg 241  Q
    ||||||| ||||    
T  11481220 gtgatatttgtg 11481231  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 9766145 - 9766107
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtg 232  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  9766145 tagggatgtaaatggatattcatggatgcggatagtgtg 9766107  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 19884783 - 19884736
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatctgtg 241  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19884783 tagggatgtaaatggatattcatggatgcggatagtgtgatatctgtg 19884736  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 2192163 - 2192120
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    ||||||||||||||||  | ||||||||||||||||||||||||    
T  2192163 tagggatgtaaatggatgtccatggatgcggataatgtgatatc 2192120  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 25294301 - 25294258
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||||| || |||||||||||||| |||||||||    
T  25294301 tagggatgtaaatggatatccatggatgcggatagtgtgatatc 25294258  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 38264698 - 38264651
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatctgtg 241  Q
    |||||||||||||||| |||||||||| |||||| |||||||| ||||    
T  38264698 tagggatgtaaatggatattcatggatacggatactgtgatatatgtg 38264651  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 17563160 - 17563116
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatct 238  Q
    |||||||||||||||| || |||||||||||||| ||| ||||||    
T  17563160 tagggatgtaaatggatatccatggatgcggatagtgtaatatct 17563116  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 34435176 - 34435133
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  34435176 tagggatgtaaatggatattcatggatgcggatagtgtgatatc 34435133  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 8576501 - 8576544
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||||| || |||||||||||||| |||||||||    
T  8576501 tagggatgtaaatggatatccatggatgcggatagtgtgatatc 8576544  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 41039084 - 41039127
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  41039084 tagggatgtaaatggatatccatggatgcggataatgtgatatc 41039127  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 51356934 - 51356980
Alignment:
Q  195 agggatgtaaatggaaattcatggatgcggataatgtgatatctgtg 241  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||    
T  51356934 agggatgtaaatggatatccatggatgcggatagtgtgatatctgtg 51356980  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 21287864 - 21287913
Alignment:
Q  192 tgtagggatgtaaatggaaattcatggatgcggataatgtgatatctgtg 241  Q
    |||||||||||||||||| || ||||||||| |||| |||||||||||||    
T  21287864 tgtagggatgtaaatggatatccatggatgcagatagtgtgatatctgtg 21287913  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 4127751 - 4127794
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||||| || |||||||||||||| |||||||||    
T  4127751 tagggatgtaaatggatatccatggatgcggatagtgtgatatc 4127794  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 13825659 - 13825706
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatctgtg 241  Q
    |||||||||||||||| || |||||||||||||| |||||||| ||||    
T  13825659 tagggatgtaaatggatatccatggatgcggatagtgtgatatatgtg 13825706  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 25875085 - 25875041
Alignment:
Q  193 gtagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    ||||||||||||||||| || |||||||| ||||| |||||||||    
T  25875085 gtagggatgtaaatggatatacatggatgtggatagtgtgatatc 25875041  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 39800782 - 39800738
Alignment:
Q  193 gtagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    ||||||||||||||||| || |||||||||||||| |||||||||    
T  39800782 gtagggatgtaaatggatatccatggatgcggatagtgtgatatc 39800738  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 40056733 - 40056777
Alignment:
Q  193 gtagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    ||||||||||||||||| || |||||||||||||| |||||||||    
T  40056733 gtagggatgtaaatggatatccatggatgcggatagtgtgatatc 40056777  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 23428985 - 23429028
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    ||||||||||||| || ||||||||||||||||| |||||||||    
T  23428985 tagggatgtaaatagatattcatggatgcggatagtgtgatatc 23429028  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 33743090 - 33743048
Alignment:
Q  193 gtagggatgtaaatggaaattcatggatgcggataatgtgata 235  Q
    ||||||||||||||||| || |||||||||||||| |||||||    
T  33743090 gtagggatgtaaatggatatccatggatgcggatagtgtgata 33743048  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 39207473 - 39207432
Alignment:
Q  196 gggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  39207473 gggatgtaaatggatatccatggatgcggatagtgtgatatc 39207432  T

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Target: scaffold0115 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 21815 - 21858
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    |||||||||||||||| || |||||||||||||| |||||||||    
T  21815 tagggatgtaaatggatatccatggatgcggatagtgtgatatc 21858  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 13807323 - 13807370
Alignment:
Q  194 tagggatgtaaatggaaattcatggatgcggataatgtgatatctgtg 241  Q
    |||||||||||||||| || |||||| ||||||| |||||||||||||    
T  13807323 tagggatgtaaatggatatccatggacgcggatagtgtgatatctgtg 13807370  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 42625392 - 42625348
Alignment:
Q  193 gtagggatgtaaatggaaattcatggatgcggataatgtgatatc 237  Q
    ||||||||||||||||| || |||||||||||| | |||||||||    
T  42625392 gtagggatgtaaatggatatccatggatgcggagagtgtgatatc 42625348  T

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