View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_low_22 (Length: 252)

Name: NF0052_low_22
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_low_22
NF0052_low_22
[»] chr4 (8 HSPs)
chr4 (11-252)||(52734699-52734940)
chr4 (96-148)||(17822883-17822935)
chr4 (202-237)||(8422988-8423023)
chr4 (200-237)||(35684277-35684314)
chr4 (130-192)||(55437345-55437409)
chr4 (96-148)||(21157768-21157820)
chr4 (96-148)||(26747420-26747472)
chr4 (96-148)||(28615334-28615386)
[»] chr5 (6 HSPs)
chr5 (191-237)||(16945123-16945169)
chr5 (95-148)||(32172653-32172706)
chr5 (92-148)||(2568658-2568714)
chr5 (111-166)||(32197702-32197757)
chr5 (125-192)||(10771935-10772003)
chr5 (201-237)||(12521450-12521486)
[»] chr2 (9 HSPs)
chr2 (94-192)||(40837451-40837553)
chr2 (94-148)||(11513898-11513952)
chr2 (94-150)||(13737002-13737058)
chr2 (202-237)||(9477863-9477898)
chr2 (189-239)||(3101190-3101240)
chr2 (94-148)||(43985019-43985073)
chr2 (209-246)||(5133646-5133683)
chr2 (201-237)||(43203012-43203048)
chr2 (116-148)||(44590034-44590066)
[»] chr8 (6 HSPs)
chr8 (125-166)||(5383133-5383174)
chr8 (190-237)||(12496562-12496609)
chr8 (94-139)||(36643909-36643954)
chr8 (190-234)||(6950223-6950267)
chr8 (94-146)||(38874648-38874700)
chr8 (96-148)||(39561559-39561611)
[»] chr7 (6 HSPs)
chr7 (201-237)||(753354-753390)
chr7 (96-166)||(18749835-18749905)
chr7 (92-148)||(2825245-2825301)
chr7 (96-148)||(12110360-12110412)
chr7 (96-148)||(12792642-12792694)
chr7 (96-148)||(40439054-40439106)
[»] chr6 (3 HSPs)
chr6 (202-237)||(33068712-33068747)
chr6 (201-234)||(32408833-32408866)
chr6 (122-166)||(2034490-2034534)
[»] chr3 (6 HSPs)
chr3 (191-237)||(28289261-28289307)
chr3 (96-149)||(36887503-36887556)
chr3 (96-148)||(21367667-21367719)
chr3 (96-148)||(25776117-25776169)
chr3 (201-237)||(43116578-43116614)
chr3 (96-148)||(53789479-53789531)
[»] chr1 (12 HSPs)
chr1 (111-153)||(26779958-26780000)
chr1 (127-169)||(44251515-44251557)
chr1 (87-153)||(49175614-49175680)
chr1 (92-148)||(7137012-7137068)
chr1 (108-148)||(8130436-8130476)
chr1 (201-237)||(12519120-12519156)
chr1 (96-148)||(12564517-12564569)
chr1 (201-237)||(24263289-24263325)
chr1 (96-148)||(27887136-27887188)
chr1 (96-148)||(34290236-34290288)
chr1 (116-148)||(37842393-37842425)
chr1 (112-148)||(38219913-38219949)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 52734940 - 52734699
Alignment:
Q  11 cacagacaagaaacgtatggacataagtttgttgtttcacttgttagactgtttgagagagattataacatgcctatatctgttatttttagcttagttc 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734940 cacagacaagaaacatatggacataagtttgttgtttcacttgtgagactgtttgagagagattataacatgcctatatctgttatttttagcttagttc 52734841  T
Q  111 catatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttttttgttttgttatagatatagcttatgataaggttttatgctat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734840 catatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttttttgttttgttatagatatagcttatgataaggttttatgctat 52734741  T
Q  211 aaacacttaattaagctgtttatccaatccaggtctcatatt 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  52734740 aaacacttaattaagctgtttatccaatccaggcctcatatt 52734699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 17822883 - 17822935
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||||||| || |||| ||||| || ||||||||||||||||||||||||    
T  17822883 tttttagcttattttcataagttctccaagatagcttatgaaaacaacttata 17822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 8422988 - 8423023
Alignment:
Q  202 ttatgctataaacacttaattaagctgtttatccaa 237  Q
    |||||||||||||||||||||||| |||||||||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaa 8423023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 35684277 - 35684314
Alignment:
Q  200 ttttatgctataaacacttaattaagctgtttatccaa 237  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  35684277 ttttatgctatatacacttaattaagctgattatccaa 35684314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 55437345 - 55437409
Alignment:
Q  130 cttatgaaaacaacttatatgaaagtaatttgactt--ttttgttttgttatagatatagcttat 192  Q
    |||||||||| | ||||||||||| |||||||||||  |||| | |||||||||| |||||||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttat 55437409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 21157820 - 21157768
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||||||| ||||||| | |||||| |||||| |||||||||| ||||||    
T  21157820 tttttagcttatttccataagctcttcaggatagcatatgaaaacatcttata 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 26747420 - 26747472
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||||||| ||||||| |||||| | |||| || ||||||||||||||||    
T  26747420 tttttagcttatttccataagttctttaggataactaatgaaaacaacttata 26747472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 28615386 - 28615334
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||| ||||| || |||| | ||||||| |||||||||||||||||||||||    
T  28615386 tttttggcttattttcataagctcttcattatagcttatgaaaacaacttata 28615334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 16945123 - 16945169
Alignment:
Q  191 atgataaggttttatgctataaacacttaattaagctgtttatccaa 237  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||    
T  16945123 atgataagcttttatgctataaacacttaattaggctgtttatccaa 16945169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 32172706 - 32172653
Alignment:
Q  95 atttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||||| ||||||    
T  32172706 attttcagcttatttccattagttcttcatgatagcttatgaaaacagcttata 32172653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 2568714 - 2568658
Alignment:
Q  92 gttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||||||||||| || |||  | ||| |||||||||||||||||||||||||||    
T  2568714 gttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 32197757 - 32197702
Alignment:
Q  111 catatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttt 166  Q
    |||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||||    
T  32197757 cataagttcttcaggatagcttatggaaacagcttatatgaaaatagtttgacttt 32197702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 10771935 - 10772003
Alignment:
Q  125 gatagcttatgaaaacaacttatatgaaagtaatttgacttt-tttgttttgttatagatatagcttat 192  Q
    |||||||||||||| ||||||||||||||  ||||| |||||   | |||||||||||| |||||||||    
T  10771935 gatagcttatgaaagcaacttatatgaaaacaatttaactttacattttttgttatagaaatagcttat 10772003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 12521486 - 12521450
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||| || ||||||||||||||||||||||||    
T  12521486 tttatgctaaaagcacttaattaagctgtttatccaa 12521450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 40837451 - 40837553
Alignment:
Q  94 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttt----tttgttttgttatagatatagct 189  Q
    |||||| |||||| ||||||| | ||| ||||||||||||| |||||||| |||||||||  |||||||||||    | | |||||||||||| ||||||    
T  40837451 tattttcagcttatttccataagctctacatgatagcttattaaaacaacatatatgaaaacaatttgactttaatttatcttttgttatagaaatagct 40837550  T
Q  190 tat 192  Q
    |||    
T  40837551 tat 40837553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 11513952 - 11513898
Alignment:
Q  94 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||| |||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  11513952 tattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttata 11513898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 13737058 - 13737002
Alignment:
Q  94 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatg 150  Q
    ||||||||||||| || |||| ||||| | |||||||||||||||| ||||||||||    
T  13737058 tatttttagcttattttcataagttctccgtgatagcttatgaaaaaaacttatatg 13737002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 9477898 - 9477863
Alignment:
Q  202 ttatgctataaacacttaattaagctgtttatccaa 237  Q
    |||||||||||||||||||||||| |||||||||||    
T  9477898 ttatgctataaacacttaattaagttgtttatccaa 9477863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 3101190 - 3101240
Alignment:
Q  189 ttatgataaggttttatgctataaacacttaattaagctgtttatccaatc 239  Q
    ||||||||||  ||||||||||||  |||||||||||||| ||||||||||    
T  3101190 ttatgataagcatttatgctataaggacttaattaagctgcttatccaatc 3101240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 43985019 - 43985073
Alignment:
Q  94 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||| |||||| || |||| | |||||| ||||||||||||||||||||||||    
T  43985019 tattttcagcttattttcataagctcttcaagatagcttatgaaaacaacttata 43985073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 5133683 - 5133646
Alignment:
Q  209 ataaacacttaattaagctgtttatccaatccaggtct 246  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  5133683 ataaacacttaattaagctgtttatccaaacaaggtct 5133646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 43203048 - 43203012
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43203048 tttatgctataaacacttaattaagatatttatccaa 43203012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 44590066 - 44590034
Alignment:
Q  116 gttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||||| ||||||||||||||||||||||||    
T  44590066 gttcttcaagatagcttatgaaaacaacttata 44590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 5383174 - 5383133
Alignment:
Q  125 gatagcttatgaaaacaacttatatgaaagtaatttgacttt 166  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  5383174 gatagcttatgaaaacaacttatatgaaaacaatttgacttt 5383133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 12496609 - 12496562
Alignment:
Q  190 tatgataaggttttatgctataaacacttaattaagctgtttatccaa 237  Q
    |||||||||  || ||||||||||||||||||||||||| ||||||||    
T  12496609 tatgataagcgttaatgctataaacacttaattaagctggttatccaa 12496562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 36643909 - 36643954
Alignment:
Q  94 tatttttagcttagttccatatgttcttcatgatagcttatgaaaa 139  Q
    |||||| |||||| ||||||| ||||| ||||||||||||||||||    
T  36643909 tattttcagcttatttccatacgttctccatgatagcttatgaaaa 36643954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 6950267 - 6950223
Alignment:
Q  190 tatgataaggttttatgctataaacacttaattaagctgtttatc 234  Q
    |||||||||  |||||||||||| |||||||||||| ||||||||    
T  6950267 tatgataagcgtttatgctataagcacttaattaagttgtttatc 6950223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 38874700 - 38874648
Alignment:
Q  94 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaactta 146  Q
    ||||||||||||| || |||||||||| ||  |||||||||||||||| ||||    
T  38874700 tatttttagcttattttcatatgttctccaaaatagcttatgaaaacagctta 38874648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 39561559 - 39561611
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| ||||||| | | |||||||||||||| ||||||||||||||    
T  39561559 ttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttata 39561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 753354 - 753390
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||||||||||||||||||| |||||||||||    
T  753354 tttatgctataaacacttaattaagttgtttatccaa 753390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 18749835 - 18749905
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttt 166  Q
    |||| |||||| ||||||| ||| | | |||||||||||||||||| ||||||| ||| || |||||||||    
T  18749835 ttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttatataaaaatagtttgacttt 18749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 2825245 - 2825301
Alignment:
Q  92 gttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||||| |||||| ||||||| |||||  | |||||||| |||||||||||||||    
T  2825245 gttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttata 2825301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 12110412 - 12110360
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||| ||| || |||| |||||||| ||||||||||||||||| ||||||    
T  12110412 tttttagattattttcataagttcttcaagatagcttatgaaaacagcttata 12110360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 12792642 - 12792694
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| ||||||||| |||||| ||||||||||||||| | ||||||    
T  12792642 ttttcagcttatttccatatgctcttcaagatagcttatgaaaatagcttata 12792694  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 40439106 - 40439054
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||| |||| ||||||| | |||||| ||||||| ||||||||||||||||    
T  40439106 tttttaacttatttccataagctcttcaggatagctaatgaaaacaacttata 40439054  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 33068712 - 33068747
Alignment:
Q  202 ttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33068712 ttatgctataaacacttaattaagctgttcatccaa 33068747  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 32408866 - 32408833
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatc 234  Q
    ||||||||||||||||||||||||| ||||||||    
T  32408866 tttatgctataaacacttaattaagttgtttatc 32408833  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 2034490 - 2034534
Alignment:
Q  122 catgatagcttatgaaaacaacttatatgaaagtaatttgacttt 166  Q
    |||| ||||||||||||| | |||||||||||||| |||||||||    
T  2034490 catgttagcttatgaaaaaagcttatatgaaagtagtttgacttt 2034534  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 28289261 - 28289307
Alignment:
Q  191 atgataaggttttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||  ||||||||| |||||||||||||| ||||||||||||    
T  28289261 atgataagtgtttatgctaaaaacacttaattaaactgtttatccaa 28289307  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 36887556 - 36887503
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatat 149  Q
    |||| |||||| || |||| |||||||| ||| |||||||||||||||||||||    
T  36887556 ttttcagcttattttcataagttcttcaagatggcttatgaaaacaacttatat 36887503  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 21367719 - 21367667
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| || |||| ||||| || ||||||||||||||||||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttata 21367667  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 25776169 - 25776117
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| ||||||| |||||||| || | |||||||||||||||||||    
T  25776169 ttttcagcttacttccataagttcttcaagacaacttatgaaaacaacttata 25776117  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 43116578 - 43116614
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  43116578 tttatgctataaacactaaattaagttgtttatccaa 43116614  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 53789479 - 53789531
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| || |||| ||||| ||||||||||||||| |||||||||||    
T  53789479 ttttcagcttaatttcataagttctccatgatagcttatgataacaacttata 53789531  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 26779958 - 26780000
Alignment:
Q  111 catatgttcttcatgatagcttatgaaaacaacttatatgaaa 153  Q
    |||| |||||||| |||||||||||||||||||||||| ||||    
T  26779958 cataagttcttcaagatagcttatgaaaacaacttataggaaa 26780000  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 44251557 - 44251515
Alignment:
Q  127 tagcttatgaaaacaacttatatgaaagtaatttgactttttt 169  Q
    ||||||||||||||||||||||| ||| | |||||||||||||    
T  44251557 tagcttatgaaaacaacttatataaaaatcatttgactttttt 44251515  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 49175680 - 49175614
Alignment:
Q  87 tatctgttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatgaaa 153  Q
    |||| ||| |||| |||||| ||||||| ||||| ||||||||||| || ||| |||||||||||||    
T  49175680 tatcagttgttttcagcttatttccataagttctacatgatagcttgtgcaaataacttatatgaaa 49175614  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 7137012 - 7137068
Alignment:
Q  92 gttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||||| |||||| || |||| ||||| || ||||||||||||||||| ||||||    
T  7137012 gttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 8130476 - 8130436
Alignment:
Q  108 ttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||| ||| | |||||||||||||||||||||||||||    
T  8130476 ttccataagttttccatgatagcttatgaaaacaacttata 8130436  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 12519120 - 12519156
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatccaa 237  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  12519120 tttatgctataaacacttagttaagttgtttatccaa 12519156  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 12564517 - 12564569
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| ||||||| ||||| || ||||||||||||||||||| ||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaacctata 12564569  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 24263289 - 24263325
Alignment:
Q  201 tttatgctataaacacttaattaagctgtttatccaa 237  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24263289 tttatgctataagcacttaattaaactgtttatccaa 24263325  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 27887136 - 27887188
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    ||||||||||| ||  ||||| ||| |||||||| ||||||||||||||||||    
T  27887136 tttttagcttatttttatatgctctccatgatagtttatgaaaacaacttata 27887188  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 34290288 - 34290236
Alignment:
Q  96 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||| |||||| || |||| |||||||| ||||||||||||||||| ||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttata 34290236  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 37842393 - 37842425
Alignment:
Q  116 gttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||||| ||||||||||||||||||||||||    
T  37842393 gttcttcaagatagcttatgaaaacaacttata 37842425  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 38219949 - 38219913
Alignment:
Q  112 atatgttcttcatgatagcttatgaaaacaacttata 148  Q
    |||||||||||| || |||||||||||||||||||||    
T  38219949 atatgttcttcaagagagcttatgaaaacaacttata 38219913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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