View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_25 (Length: 251)
Name: NF0052_low_25
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 45 - 251
Target Start/End: Original strand, 52734356 - 52734562
Alignment:
| Q |
45 |
atcccaaacctccaaaagagacagcctcaaaaccttaattttccaaacaaacattcatcaaaactcatttgttgttctcttagcagttcagacatggttg |
144 |
Q |
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| T |
52734356 |
atcccaaacctccaaaagagacagcctcagaaccttaattttccaaacaaacattcatcaaaacccatttgttgttctcttagcagttcagacatggttg |
52734455 |
T |
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| Q |
145 |
tatctcagaaacttgcacaacagttcaatccaaatattcctatagagaaagctgttacacctccatcatcatggtatattgatccctctttcttccacct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52734456 |
tatctcagaaacttgcacaacagttcaatccaaatattcctatagagaaagctgttacacctccatcatcatggtatattgatccctctttcttccacct |
52734555 |
T |
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| Q |
245 |
tgagctc |
251 |
Q |
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||||||| |
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| T |
52734556 |
tgagctc |
52734562 |
T |
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