View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_low_28 (Length: 231)

Name: NF0052_low_28
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_low_28
NF0052_low_28
[»] chr6 (6 HSPs)
chr6 (1-148)||(24350532-24350679)
chr6 (1-106)||(30845096-30845201)
chr6 (1-143)||(10772531-10772673)
chr6 (4-143)||(24842824-24842963)
chr6 (4-107)||(10670346-10670448)
chr6 (45-143)||(31026651-31026749)
[»] chr2 (9 HSPs)
chr2 (1-141)||(14951182-14951322)
chr2 (1-140)||(6186616-6186755)
chr2 (1-143)||(38531703-38531845)
chr2 (1-143)||(9910252-9910395)
chr2 (45-143)||(6705281-6705379)
chr2 (8-135)||(1532986-1533113)
chr2 (8-112)||(27888484-27888587)
chr2 (6-143)||(40899904-40900041)
chr2 (58-143)||(33544077-33544163)
[»] chr5 (13 HSPs)
chr5 (1-140)||(12155919-12156058)
chr5 (1-141)||(40600214-40600355)
chr5 (1-143)||(11470504-11470650)
chr5 (1-143)||(42269135-42269278)
chr5 (4-139)||(24867415-24867550)
chr5 (45-143)||(40680647-40680744)
chr5 (16-143)||(26331417-26331543)
chr5 (16-143)||(26331758-26331885)
chr5 (45-143)||(30248309-30248408)
chr5 (45-105)||(42221130-42221190)
chr5 (45-143)||(23247102-23247200)
chr5 (87-139)||(34574554-34574606)
chr5 (75-105)||(16376756-16376786)
[»] chr1 (9 HSPs)
chr1 (1-140)||(14351536-14351674)
chr1 (1-143)||(2077752-2077895)
chr1 (8-143)||(27787072-27787207)
chr1 (1-143)||(10494473-10494616)
chr1 (45-143)||(15495649-15495747)
chr1 (12-143)||(29099215-29099346)
chr1 (1-105)||(11814323-11814426)
chr1 (83-143)||(26842335-26842396)
chr1 (4-143)||(25537390-25537527)
[»] chr3 (5 HSPs)
chr3 (9-140)||(52984642-52984775)
chr3 (8-143)||(46743218-46743353)
chr3 (65-140)||(3460827-3460902)
chr3 (26-105)||(52991649-52991727)
chr3 (1-62)||(31625661-31625722)
[»] chr4 (7 HSPs)
chr4 (26-141)||(55728328-55728443)
chr4 (1-141)||(52635323-52635463)
chr4 (1-135)||(45872810-45872943)
chr4 (45-142)||(12130295-12130392)
chr4 (4-143)||(42677928-42678067)
chr4 (49-143)||(14440879-14440973)
chr4 (75-105)||(7971680-7971710)
[»] chr7 (5 HSPs)
chr7 (1-142)||(24717683-24717825)
chr7 (1-143)||(43048022-43048165)
chr7 (9-143)||(32978896-32979030)
chr7 (6-142)||(21590866-21591002)
chr7 (65-105)||(7437183-7437223)
[»] scaffold0974 (1 HSPs)
scaffold0974 (1-143)||(2737-2880)
[»] chr8 (6 HSPs)
chr8 (4-104)||(39580379-39580478)
chr8 (1-104)||(3763321-3763424)
chr8 (1-143)||(5514956-5515099)
chr8 (4-143)||(15050365-15050504)
chr8 (5-143)||(10181740-10181878)
chr8 (87-130)||(25142693-25142736)
[»] scaffold0083 (1 HSPs)
scaffold0083 (4-135)||(2830-2963)
[»] scaffold0027 (1 HSPs)
scaffold0027 (45-143)||(2571-2670)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 24350532 - 24350679
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24350532 ttgcaacggtttagcacaaaatttgtttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagttttgattg 24350631  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttgtagtttga 148  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  24350632 gtttcaagggcctcagtagagggtgtttttgatttgtttgcagtttga 24350679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30845201 - 30845096
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  30845201 ttgcaacggtttgacacaagatttgtttctgctattgcgtgggtgtttagactttggtttttgaagatgactttttggttttggtgtttagtttttattg 30845102  T
Q  101 gtttca 106  Q
    ||||||    
T  30845101 gtttca 30845096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 10772673 - 10772531
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||||||||||| || ||||||| ||||| |  | |||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  10772673 ttgcaacggtttggcacaagacttgtttctgccattgctcaagcgtttagactttgatttttggagatgactttttggttctggtgtttagtttttattg 10772574  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||  ||| ||||||| ||| ||||||||||||| |||||||    
T  10772573 gttttgaggccctcagtggagggtgtttttggtttatttgtag 10772531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 24842963 - 24842824
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    |||| |||| ||||||||||| ||| ||||| ||| |||| ||||| || || |||||||||| |||||| |||||||||||||||||||||||||||||    
T  24842963 caacagtttagcacaagatttgtttttgctactgctcgggtgtttaaacgttggtttttggagctgactttttggttttggtgtttagtttttattggtt 24842864  T
Q  104 tcaagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||  || ||| ||||||| |||||||||||||||||||||    
T  24842863 tcggggcccttagtagagggtgtttttggtttgtttgtag 24842824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 10670346 - 10670448
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    |||||||||| |||||||||| ||||||||||||||| ||  |||||||||| | ||||||| |||||||||| | ||||||||||||||||||||||||    
T  10670346 caacggtttgacacaagatttgtttctgctattgcgcaggcatttagactttggattttggatatgacttctttg-tttggtgtttagtttttattggtt 10670444  T
Q  104 tcaa 107  Q
    ||||    
T  10670445 tcaa 10670448  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 31026651 - 31026749
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||||||| ||||||||||| ||||| |||| ||||||  |||||||||||||||||  |||| ||||||| ||| |||||||||||||||||||||    
T  31026651 gtttagactttggtttttggagacgacttattgg-tttggttattagtttttattggttttgagggccctcagtggagggtgtttttggtttgtttgtag 31026749  T

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Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 14951182 - 14951322
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  14951182 ttgcaacggtttggcacaagatttgtttctgctattgcgcgggtgtttagactttagtgtttggagatgatttcttggtttttgtgtttagtttttattg 14951281  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttgt 141  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  14951282 gtttcaggggcctcagtagagggtgtttttggtttgtttgt 14951322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 6186616 - 6186755
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6186616 ttgcaacggtttgacacaagatttgtttttgctattgcgcgggtgtttagactttagtttttggagatgacttcttggttttggtgtttaatttttattg 6186715  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttg 140  Q
    |||||| |||||||||||||| ||||||||| ||||||||    
T  6186716 gtttcaggggcctcagtagagagtgtttttgttttgtttg 6186755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38531703 - 38531845
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||| |||| ||||||||||| ||||||||| | ||| || |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||    
T  38531703 ttgcaacagtttagcacaagatttgtttctgctactacgcaggtgtttagacgttggtttttggagatgactttttggttttggtgtttagtttttattg 38531802  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||||  |||||||||||||  |||||||||||||||||||||    
T  38531803 gtttcgggggcctcagtagatggtgtttttggtttgtttgtag 38531845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 9910395 - 9910252
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||| ||||||| || ||||||||||||| | || ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||     
T  9910395 ttgcaacggtttgtcacaagacttgtttctgctattgctcaggcgtttagactttggtttttggagatgactttttggttatggtgtttagtttttatta 9910296  T
Q  101 gtttcaagggcc-tcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||   ||||| ||||| ||| ||||||||||||||| |||||    
T  9910295 gtttggggggccttcagtggagggtgtttttggtttgtatgtag 9910252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 6705379 - 6705281
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  6705379 gtttagactttggtttttggtgatgacttcttggttt-ggtgtttagtttttattggtttcgagggccctcagtggagggtgtttttggtttgtttgtag 6705281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 1533113 - 1532986
Alignment:
Q  8 ggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaa 107  Q
    ||||||||||||||||| |||||||||||||||    |||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||  |    
T  1533113 ggtttggcacaagatttgtttctgctattgcgcaaacgtttggactttggtttttggagatgacttcttgg-tttggtgtttagcttttattggttttga 1533015  T
Q  108 ggg-cctcagtagagtgtgtttttggttt 135  Q
    ||| ||| ||| ||| |||||||||||||    
T  1533014 gggcccttagtggagggtgtttttggttt 1532986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 27888587 - 27888484
Alignment:
Q  8 ggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaa 107  Q
    |||||| |||||||||| ||||| ||||||||| |  ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  27888587 ggtttgacacaagatttgtttctactattgcgcagacgtttagactttggtttttggagatgacttcttgg-tttgatgtttagtttttattggtttcga 27888489  T
Q  108 gggcc 112  Q
    |||||    
T  27888488 gggcc 27888484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 40900041 - 40899904
Alignment:
Q  6 acggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttc 105  Q
    ||||||||||||||||||| ||||| ||| |||   |  ||||||| ||| ||||||||||||| |||||||| |||| |||||||||||||||||| ||    
T  40900041 acggtttggcacaagatttgtttctactaatgcatagacgtttagaatttggtttttggagatggcttcttgg-tttgatgtttagtttttattggtctc 40899943  T
Q  106 aaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
     |||| ||||||| |||  ||||||||||||||||||||    
T  40899942 gagggccctcagtggaggatgtttttggtttgtttgtag 40899904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 33544163 - 33544077
Alignment:
Q  58 tttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||| |||||||||||  ||| |||||||||||||||||||||||||   ||| ||||||| ||| |||||||||||||||||||||    
T  33544163 ttttgggagatgactttgtggctttggtgtttagtttttattggttttgggggccctcagtggagggtgtttttggtttgtttgtag 33544077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 12156058 - 12155919
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  12156058 ttgcaatggtttgacacaagatttgtttctgctattgcgcgggtgtttagactttagtttttggagatgacttcttgattttggtgtttaatttttattg 12155959  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttg 140  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  12155958 gtttcaggggcctcagtagagggtgtttttggtttgtttg 12155919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 40600214 - 40600355
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||||||||||| || ||| |||||||||   || ||| | |||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  40600214 ttgcaacggtttggcacaagacttgtttttgctattgcttaggcgttcatactttgatttttggagatgactttttggttctggtgtttagtttttattg 40600313  T
Q  101 gtttcaaggg-cctcagtagagtgtgtttttggtttgtttgt 141  Q
    |||||| ||| |||| || ||| |||||||||||||||||||    
T  40600314 gtttcaggggccctcggtggagggtgtttttggtttgtttgt 40600355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 11470650 - 11470504
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttct-gctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttatt 99  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||||||||| ||| |||||| ||||||| ||  |||||||| ||||| |||||||||    
T  11470650 ttgcaacggtttggcacaagatttgtttcttgatattgtgcgggagtttagattttggttttttgagatgattttatggttttgatgttttgtttttatt 11470551  T
Q  100 ggtttcaa--gggcc-tcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||||  ||||| |  || ||| |||||||||||||||||||||    
T  11470550 ggtttcaagtgggccattggtggagggtgtttttggtttgtttgtag 11470504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42269135 - 42269278
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||| ||||||||||||| || ||||| ||||||| | || ||||||| ||| ||||||||||||||||| ||||||  |||||| |||||||||||    
T  42269135 ttgcaacagtttggcacaagacttgtttctactattgctcaggcgtttagaatttggtttttggagatgactttttggttacggtgttcagtttttattg 42269234  T
Q  101 gtttcaagggc-ctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||   |||| |||| | ||| |||||||||||||||||||||    
T  42269235 gtttggggggctctcaatggagggtgtttttggtttgtttgtag 42269278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 24867415 - 24867550
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    |||||| |||||||||||||| ||| |||||||||||  | ||||||||||| |||||||||||||||||||| |||| |  ||||||||||||||||||    
T  24867415 caacggattggcacaagatttgtttatgctattgcgcatgcgtttagactttggtttttggagatgacttctttgttt-gacgtttagtttttattggtt 24867513  T
Q  104 tcaagggcctcagtag-agtgtgtttttggtttgttt 139  Q
    || ||||||    ||| || |||||||||||||||||    
T  24867514 tcgagggcccgcataggagggtgtttttggtttgttt 24867550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 40680744 - 40680647
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  40680744 gtttagactttggtttttggtgatgact-cttggttt-ggtgtttagtttttattggtttcgagggccctcagtggagggtgtttttggtttgtttgtag 40680647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 26331417 - 26331543
Alignment:
Q  16 acaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaagggcctca 115  Q
    ||||||||| ||| ||||||||| | |  ||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||     
T  26331417 acaagatttgtttatgctattgcacagacgtttagactttggtttttggagatgacttattgg-tttggtgtctagtttttattggtttcgagggcctcg 26331515  T
Q  116 gtagagtgtgtttttggtttgtttgtag 143  Q
    || | |  |||||||| || ||||||||    
T  26331516 gtggtggatgtttttgattcgtttgtag 26331543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 26331758 - 26331885
Alignment:
Q  16 acaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaagggcctca 115  Q
    ||||||||| ||| ||||||||| | |  ||||||||||| |||||||||||||||||  | | |||||||| ||||||||||||||||| ||||||||     
T  26331758 acaagatttgtttatgctattgcacagacgtttagactttggtttttggagatgactttattggtttggtgtctagtttttattggtttcgagggcctcg 26331857  T
Q  116 gtagagtgtgtttttggtttgtttgtag 143  Q
    || | | ||||||||| || ||||||||    
T  26331858 gtggtgggtgtttttgattcgtttgtag 26331885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 30248408 - 30248309
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttc-aagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||| |||  |||| |||||||||||  ||||||||||||||||||||||||||||||  ||| ||| ||| ||| |||||||||||||||||||||    
T  30248408 gtttagagtttgtttttgggagatgactttatggttttggtgtttagtttttattggtttcggaggcccttagtggagggtgtttttggtttgtttgtag 30248309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 42221190 - 42221130
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttc 105  Q
    ||||| ||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  42221190 gtttatactttggttttgggagatgactttgtggttttggtgtttagtttttattggtttc 42221130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 23247102 - 23247200
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||| ||||| ||||| |||||||| ||  |||||||||||  |||||||||||||||| | || |||| || |||  ||||||||||||||||||||    
T  23247102 gtttaaacttttgttttgggagatgattttatggttttggtgaatagtttttattggttttagggccctcggtggaggatgtttttggtttgtttgtag 23247200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 34574554 - 34574606
Alignment:
Q  87 tttagtttttattggtttcaagggcctcagtagagtgtgtttttggtttgttt 139  Q
    |||||||||||||||||||| || ||||||| |||  ||||||||||||||||    
T  34574554 tttagtttttattggtttcagggccctcagtggaggttgtttttggtttgttt 34574606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 16376756 - 16376786
Alignment:
Q  75 ttggttttggtgtttagtttttattggtttc 105  Q
    |||||||||||||||||||||||||||||||    
T  16376756 ttggttttggtgtttagtttttattggtttc 16376786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 14351536 - 14351674
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||    
T  14351536 ttgcaatggtttggcacaagatttgtttctgctattgcgcgggtgtttagactttagtttttggagatgacttcttgattttggtgtttaattttt-ttg 14351634  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttg 140  Q
    ||||||||||||||||||||| ||||||||| ||| ||||    
T  14351635 gtttcaagggcctcagtagagggtgtttttgatttatttg 14351674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 2077752 - 2077895
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||||||||| |||||||| || ||| ||||||||| | |  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  2077752 ttgcaacggttttgcacaagacttgtttatgctattgctcagacgtttagactttggtttttggagatgactttttggttttggtgtttagtttttattg 2077851  T
Q  101 gtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||||| ||| ||| |||  || |||||||||||||||||||||    
T  2077852 gtttcaggggcccttagtgaagggtgtttttggtttgtttgtag 2077895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 27787072 - 27787207
Alignment:
Q  8 ggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaa 107  Q
    ||||||||  ||||||| ||||||||||||||| |  |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  27787072 ggtttggcttaagatttgtttctgctattgcgcagacgtttggactttggtttttggagatgacttcttgg-tttggtgtttagtttttattggtttcga 27787170  T
Q  108 ggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||| ||||||| ||| ||||||||| |||| ||||||    
T  27787171 gggccctcagtggagggtgtttttgatttgcttgtag 27787207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 10494616 - 10494473
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||| ||||||||||||||||| |||||||||||||   || |||||||||||  |||||||||||||||| | ||||||| ||||||||||||||||    
T  10494616 ttgcaatggtttggcacaagatttgtttctgctattgcaaaggcgtttagactttgatttttggagatgacttttgggttttgttgtttagtttttattg 10494517  T
Q  101 gtttcaag-ggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||||  | | ||| ||| ||| || ||||||||||||||||||    
T  10494516 gtttcgggagcccttagtggagggtatttttggtttgtttgtag 10494473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 15495747 - 15495649
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||| |||| ||||||| ||| ||||||||| |||||||||||    
T  15495747 gtttagactttggtttttggtgatgacttcttgg-tttggtgtttagtttttattgctttcgagggccctcagtggagggtgtttttgatttgtttgtag 15495649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 29099346 - 29099215
Alignment:
Q  12 tggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg- 110  Q
    |||||||| |||| ||| |||||||||||    ||||||||||| |||||||||||||||||||||| |  |||||||||| | |||||||||| ||||     
T  29099346 tggcacaaaatttgtttatgctattgcgcaaacgtttagactttggtttttggagatgacttcttgg-tgcggtgtttagtctctattggtttcgagggc 29099248  T
Q  111 cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||| ||| |||||||||||||||| ||||    
T  29099247 cctcagtggagggtgtttttggtttgttcgtag 29099215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 11814426 - 11814323
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||  | ||||||||||  |||||||||||| |||| || | |||||| |||| |||||||||    
T  11814426 ttgcaacagttaggcacaagatttatttctgctattgcgcaagcgtttagacttaggtttttggagatcactttttag-tttggtatttaatttttattg 11814328  T
Q  101 gtttc 105  Q
    |||||    
T  11814327 gtttc 11814323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 26842335 - 26842396
Alignment:
Q  83 ggtgtttagtttttattggtttcaagggcc-tcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||||||||| | |||||||||| |||||| || |||||| |||||||||||||||||||||    
T  26842335 ggtgtttagtctgtattggtttcgagggccctctgtagagggtgtttttggtttgtttgtag 26842396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 25537527 - 25537390
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    ||||||| || |||||||||| ||||||||||| ||  || ||||||||||| | ||||  |||||| ||||||| ||||||||||||| | |||| |||    
T  25537527 caacggtatgacacaagatttgtttctgctatttcgtaggcgtttagacttt-gattttttagatgatttcttgg-tttggtgtttagtctctatt-gtt 25537431  T
Q  104 tcaagg-gcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    || |||  |||| || ||  |||||||||||||||||||||    
T  25537430 tcgaggaccctccgtggaaggtgtttttggtttgtttgtag 25537390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 52984642 - 52984775
Alignment:
Q  9 gtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaag 108  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |    
T  52984642 gtttggcacaagatttgtttctgctattgcgcgggtgtttagactttagtttttgcagatgacttcttggttttggtgtttagtttttaatggtttcagg 52984741  T
Q  109 ggcctcagt--agagtgtgtttttggtttgtttg 140  Q
    |||||||||  |||| ||||||||||||||||||    
T  52984742 ggcctcagtagagagggtgtttttggtttgtttg 52984775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 46743218 - 46743353
Alignment:
Q  8 ggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaa 107  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||| |    
T  46743218 ggtttggcacaagatttgtttctgctattgcgcgggcgtttggactttggtttttagagatgacttcttgg-tttgatgtttagtttttattggtttcga 46743316  T
Q  108 ggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||| ||||||| ||  |||||||||||||| ||||||    
T  46743317 gggccctcagtggatggtgtttttggtttgcttgtag 46743353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 3460827 - 3460902
Alignment:
Q  65 agatgacttcttggttttggtgtttagtttttattggtttcaagggcctcagtagagtgtgtttttggtttgtttg 140  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||    
T  3460827 agatgactttgtggttttggtgtttagtttttattggtttcgagggcctccgtggagggtgtttttggtttgtttg 3460902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 52991649 - 52991727
Alignment:
Q  26 tttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttc 105  Q
    ||||| |||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  52991649 tttcttctattgcgcgggcgtttagactttgatttttggagatgacttcttgg-tttggtgtttagtctctattggtttc 52991727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31625722 - 31625661
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagttttt 62  Q
    |||||| | ||||||||||||||| ||||||||| || ||||| ||||||||||||||||||    
T  31625722 ttgcaatgatttggcacaagatttgtttctgctactgtgcgggtgtttagactttagttttt 31625661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 55728443 - 55728328
Alignment:
Q  26 tttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaagggcctcagtagagtgtg 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  55728443 tttctgctattgcgcgggtgtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaggggcctcagtagagggtg 55728344  T
Q  126 tttttggtttgtttgt 141  Q
    ||||| |||| |||||    
T  55728343 ttttttgtttatttgt 55728328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 52635463 - 52635323
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||||| ||||||||||||||| |||||||||||| ||||  ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  52635463 ttgcaacgatttggcacaagatttgtttctgctattgagcggatgtttagactttagtttttggaaatgacttcttagttttggtgtttagtttttattg 52635364  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggtttgtttgt 141  Q
     |||   |||||||||||||| ||||||||| |||||||||    
T  52635363 ctttttggggcctcagtagagggtgtttttgatttgtttgt 52635323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 45872943 - 45872810
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||||||||| | ||||||||| |||||||||||||||  | ||||||||||| |||||||||||||||||  ||| |||||||| ||||||||||||    
T  45872943 ttgcaacggtttcgtacaagatttgtttctgctattgcgcatgcgtttagactttggtttttggagatgactt-atgggtttggtgtctagtttttattg 45872845  T
Q  101 gtttcaagggcctcagtagagtgtgtttttggttt 135  Q
    ||||| ||||||||||| | | || ||||||||||    
T  45872844 gtttcgagggcctcagtggtgagtatttttggttt 45872810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 12130392 - 12130295
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaagggc-ctcagtagagtgtgtttttggtttgtttgta 142  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||    
T  12130392 gtttagactttggtttttggagatgacttattgg-tttggtgtttagtttttattggtttcgagggctctcagtggagagtgtttttggtttgtttgta 12130295  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 42677928 - 42678067
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    |||| |||||| ||||||||| ||| || ||||| || || ||||||||||| |||||  ||||||||||||||| |||| |||||| |||||||||| |    
T  42677928 caacagtttggtacaagatttttttatgttattgtgcaggcgtttagactttggttttgagagatgacttcttgg-tttgatgtttaatttttattggct 42678026  T
Q  104 tcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    || |||| | ||||| | |||||||||||||||||||||||    
T  42678027 tcgagggtcatcagtggtgtgtgtttttggtttgtttgtag 42678067  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 14440973 - 14440879
Alignment:
Q  49 agactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||  | ||| |||||||||||||||||||||    
T  14440973 agactttggtttttgaagatgacttcttggttt-ggtgtttagtttttattggtttcgagggccctccatggagggtgtttttggtttgtttgtag 14440879  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 7971680 - 7971710
Alignment:
Q  75 ttggttttggtgtttagtttttattggtttc 105  Q
    |||||||||||||||||||||||||||||||    
T  7971680 ttggttttggtgtttagtttttattggtttc 7971710  T

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Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 24717825 - 24717683
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||| ||||||||||||| || ||||| ||||||| | || ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  24717825 ttgcaactgtttggcacaagacttgtttctactattgctcaggcgtttagactttggtttttggagatgactttttggttatggtgtttagtttttattg 24717726  T
Q  101 gtttcaaggg-cctcagtagagtgtgtttttggtttgtttgta 142  Q
    ||||   ||| ||||||||||| ||||||||||||||||||||    
T  24717725 gtttggtgggccctcagtagagggtgtttttggtttgtttgta 24717683  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 43048022 - 43048165
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||  |||||||||| ||| ||||||||| || |  |||||||||| ||||||||||||||||| || ||| | |||||||||||||||||    
T  43048022 ttgcaacggttttacacaagatttgtttatgctattgctcgtgcatttagactttggtttttggagatgacttttttgttctagtgtttagtttttattg 43048121  T
Q  101 gtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||||  ||| ||||||||||| |||||||||||||||||||||    
T  43048122 gtttcgggggccctcagtagagggtgtttttggtttgtttgtag 43048165  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 32979030 - 32978896
Alignment:
Q  9 gtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttcaag 108  Q
    |||||||||||||||| ||| ||  ||||||| || |||| |||||| |||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  32979030 gtttggcacaagatttgtttatgtcattgcgcaggcgtttggactttggtttttggagatgacttcttgg-tttagtgtttagtttttattgatttcaag 32978932  T
Q  109 ggc-ctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||| |||||| ||| ||||||||  |||| ||||||    
T  32978931 ggcgctcagtggagggtgttttttatttgcttgtag 32978896  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 21590866 - 21591002
Alignment:
Q  6 acggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttc 105  Q
    ||||||||||||||||||| ||||||||||||| |    ||||||| |||  ||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  21590866 acggtttggcacaagatttgtttctgctattgcacaaacgtttagaatttgttttttggagatgacttctt-gatttggtgtttaatttttattggtttc 21590964  T
Q  106 aagggc-ctcagtagagtgtgtttttggtttgtttgta 142  Q
     |||||  || || ||| ||||||||||||||||||||    
T  21590965 gagggctttcggtggagggtgtttttggtttgtttgta 21591002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 7437223 - 7437183
Alignment:
Q  65 agatgacttcttggttttggtgtttagtttttattggtttc 105  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  7437223 agatgactttgtggttttggtgtttagtttttattggtttc 7437183  T

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Target: scaffold0974 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 2737 - 2880
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||||||||||||||||| || ||||||||||||| | || ||||||||||| | |||||||||||| || |||||| | |||||||||||||||||    
T  2737 ttgcaacggtttggcacaagacttgtttctgctattgctcaggcgtttagactttgggttttggagatgaatttttggttatagtgtttagtttttattg 2836  T
Q  101 gttt-caagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
     |||    |||||| ||| ||| ||||||| |||||||||||||    
T  2837 atttgggggggccttagtggagggtgttttaggtttgtttgtag 2880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 39580379 - 39580478
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    |||||||||| |||||||||| ||| |||||||| || |  ||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||    
T  39580379 caacggtttgacacaagatttgtttatgctattgtgcagacgtttagactttggtttttggagatgacttcttgg-tttagtgtttagtttatattggtt 39580477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3763321 - 3763424
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    |||||| |||||||||||||| || ||||||||||||| | || ||||| |||||  |||||||||||||||| ||||||  | ||||||||||||||||    
T  3763321 ttgcaatggtttggcacaagacttgtttctgctattgctcaggtgtttaaactttgatttttggagatgactttttggttaagatgtttagtttttattg 3763420  T
Q  101 gttt 104  Q
    ||||    
T  3763421 gttt 3763424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 5515099 - 5514956
Alignment:
Q  1 ttgcaacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattg 100  Q
    ||||||| ||||||||||||| || ||||| ||||||| | ||  |||||| ||| ||||||||||||||||| ||||||  | |||||| |||||||||    
T  5515099 ttgcaacagtttggcacaagacttgtttctactattgctcaggcatttagaatttggtttttggagatgactttttggttacgatgtttaatttttattg 5515000  T
Q  101 gtttcaaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
    ||||   ||| ||||||| ||| ||||||||||||| |||||||    
T  5514999 gtttggggggccctcagtggagggtgtttttggtttatttgtag 5514956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 15050365 - 15050504
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtt 103  Q
    ||||||| || |||||||||| ||||||||||||||  || |||||||||||  |||||  |||||| ||||||| ||||||||||||| | ||||||||    
T  15050365 caacggtatgacacaagatttgtttctgctattgcgtaggcgtttagactttgatttttttagatgatttcttgg-tttggtgtttagtctctattggtt 15050463  T
Q  104 tcaagg-gcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    || |||  |||| ||  || |||||||||||||||||||||    
T  15050464 tcgaggaccctccgtgaagggtgtttttggtttgtttgtag 15050504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 10181878 - 10181740
Alignment:
Q  5 aacggtttggcacaagatttatttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggttt 104  Q
    |||||||||||||| ||||| ||| ||||||| | | |  |||| | ||||| ||||||||||||||||||||| ||||  |||||||||||||||||||    
T  10181878 aacggtttggcacatgatttgtttatgctatttcccagtcgtttggtctttaatttttggagatgacttcttgg-tttgaagtttagtttttattggttt 10181780  T
Q  105 caaggg-cctcagtagagtgtgtttttggtttgtttgtag 143  Q
      |||| |||| || ||| |||||||||||||| ||||||    
T  10181779 tgagggccctcggtggagggtgtttttggtttgcttgtag 10181740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 25142736 - 25142693
Alignment:
Q  87 tttagtttttattggtttcaagggcctcagtagagtgtgttttt 130  Q
    ||||||||||||||||||||||||||||||| |||  |||||||    
T  25142736 tttagtttttattggtttcaagggcctcagtggaggttgttttt 25142693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 2963 - 2830
Alignment:
Q  4 caacggtttggcacaagatttatttctgctattgcgcgg--gagtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattgg 101  Q
    |||| |||||||||||||||| ||||||||||||| |||  | ||||||||||| |||||||||||||| || |||| | ||||||||| |||||||| |    
T  2963 caacagtttggcacaagatttgtttctgctattgcacgggcgtgtttagactttggtttttggagatgaatttttgg-tatggtgtttaatttttattag 2865  T
Q  102 tttcaagggc-ctcagtagagtgtgtttttggttt 135  Q
    |||| ||||| || ||||||| |||||||| ||||    
T  2864 tttcgagggctcttagtagagggtgttttttgttt 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 2670 - 2571
Alignment:
Q  45 gtttagactttagtttttggagatgacttcttggttttggtgtttagtttttattggtttc-aagggcctcagtagagtgtgtttttggtttgtttgtag 143  Q
    |||||||||||  |||| |||||||||||  |||||||| ||||||| |||||||| |||| |||| ||||| | ||| |||||||||||||||||||||    
T  2670 gtttagactttgattttgggagatgactttgtggttttgatgtttagattttattgatttcgaaggccctcaatggagggtgtttttggtttgtttgtag 2571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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