View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_3 (Length: 397)
Name: NF0052_low_3
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 30079212 - 30079598
Alignment:
| Q |
1 |
ataagcttctgtttttaccggcagcgaagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacata |
100 |
Q |
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| T |
30079212 |
ataagcttctgtttttaccggcagcgaagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacata |
30079311 |
T |
|
| Q |
101 |
tttccaccctgcaaaagatgctgatgtgttcaattggcaggacagaatgaggcatttagagaggaagtggctcttctcatttgctggagctccccgtcct |
200 |
Q |
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| T |
30079312 |
cttccaccctgcaaaagatgctgatgtgttcaattggcaggacagaatgaggcatttagagaggaagtggcttttctcatttgctggagctccccgtcct |
30079411 |
T |
|
| Q |
201 |
gacaatgccaaatcaatcaggggtcagttaattgagcaatgcagaagttcaccggttggtaagcttttggaatgtgacttcggtgaaagcaaatgtcatt |
300 |
Q |
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| T |
30079412 |
gacaatgccaaatcaatcaggggtcagttaattgagcaatgcagaagttcaccggttggtaagcttttggaatgcgacttcggtgaaagcaaatgtcatt |
30079511 |
T |
|
| Q |
301 |
ctcccagtagcataatgcagatgtttcaaagctcacagttctgcttgcaacctcagggtgattcatacactcgaaggtctgcctttg |
387 |
Q |
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| T |
30079512 |
ctcccagtagcataatgcagatgtttcaaagctcacagttctgcttgcaacctcagggtgattcatacactcgaaggtctgcctttg |
30079598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 39485935 - 39485608
Alignment:
| Q |
1 |
ataagcttctgtttttaccggcagcgaagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacata |
100 |
Q |
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|||||||| |||||||||| || || ||||||||||| |||||||| || || || ||||| |||||||| ||||||||||||||||||||||| || || |
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| T |
39485935 |
ataagcttttgtttttacctgctgctaagaatatgtctatgcttgttgttgaatctagtccttggaatgctaatgattttgggattccttatccgacgta |
39485836 |
T |
|
| Q |
101 |
tttccaccctgcaaaagatgctgatgtgttcaattggcaggacagaatgaggcatttagagaggaagtggctcttctcatttgctggagctccccgtcct |
200 |
Q |
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|||||| || || |||||| ||||| || ||||||||| || ||||| || |||||||| ||||| ||||| ||||| || || || |||||| |
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| T |
39485835 |
tttccatcccgcgaaagataaggatgtttttgtttggcaggagaggatgagaaggttggagaggaaatggcttttctcttttgcgggtgcacctcgtcct |
39485736 |
T |
|
| Q |
201 |
gacaatgccaaatcaatcaggggtcagttaattgagcaatgcagaagttcaccggttggtaagcttttggaatgtgacttcggtgaaagcaaatgtcatt |
300 |
Q |
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| T |
39485735 |
ggtaatgcaaaatcgattaggggtcagataattgagcaatgtaggagttctaaagttggtaagcttttggagtgtgattttggggaaagtaaatgtcatt |
39485636 |
T |
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| Q |
301 |
ctcccagtagcataatgcagatgtttca |
328 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
39485635 |
ctcctagtagcataatgcagatgtttca |
39485608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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