View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0052_low_30 (Length: 230)

Name: NF0052_low_30
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0052_low_30
NF0052_low_30
[»] chr2 (7 HSPs)
chr2 (2-138)||(14951069-14951205)
chr2 (2-141)||(6186501-6186639)
chr2 (2-126)||(38531603-38531726)
chr2 (5-100)||(9910375-9910470)
chr2 (2-71)||(1533097-1533166)
chr2 (2-69)||(27888571-27888638)
chr2 (30-118)||(33544179-33544267)
[»] chr6 (5 HSPs)
chr6 (2-137)||(24350420-24350555)
chr6 (2-128)||(24842943-24843068)
chr6 (2-111)||(30845178-30845287)
chr6 (5-69)||(10772653-10772717)
chr6 (12-61)||(9566640-9566689)
[»] chr1 (7 HSPs)
chr1 (2-137)||(14351424-14351559)
chr1 (2-118)||(10494593-10494709)
chr1 (1-60)||(11814402-11814461)
chr1 (5-59)||(2077718-2077772)
chr1 (2-59)||(29099334-29099391)
chr1 (2-61)||(26842258-26842317)
chr1 (2-69)||(25537507-25537572)
[»] chr4 (3 HSPs)
chr4 (2-144)||(52635440-52635581)
chr4 (30-144)||(55728449-55728562)
chr4 (2-61)||(45872920-45872979)
[»] chr5 (8 HSPs)
chr5 (2-144)||(12156035-12156177)
chr5 (5-111)||(40600128-40600234)
chr5 (2-99)||(11470627-11470724)
chr5 (5-111)||(42269049-42269155)
chr5 (30-107)||(34574451-34574528)
chr5 (30-112)||(30248411-30248493)
chr5 (30-111)||(42221193-42221274)
chr5 (2-50)||(24867387-24867435)
[»] chr8 (4 HSPs)
chr8 (5-111)||(5515079-5515185)
chr8 (5-61)||(3763285-3763341)
chr8 (2-60)||(10181859-10181917)
chr8 (2-69)||(15050320-15050385)
[»] chr7 (6 HSPs)
chr7 (2-118)||(43047929-43048045)
chr7 (5-111)||(24717805-24717911)
chr7 (9-61)||(26711929-26711981)
chr7 (2-61)||(32979015-32979074)
chr7 (2-60)||(21590826-21590884)
chr7 (12-60)||(34293802-34293850)
[»] scaffold0974 (1 HSPs)
scaffold0974 (5-111)||(2651-2757)
[»] chr3 (3 HSPs)
chr3 (5-107)||(31698995-31699097)
chr3 (102-144)||(52984592-52984634)
chr3 (2-63)||(46743173-46743234)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 14951205 - 14951069
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||    
T  14951205 aaatcttgtgccaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgtgtaatcgcacattgcttctcttctgcagttgagcgc 14951106  T
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacct 138  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14951105 aattaagcacatgtaaacacccaaaaaatcaccacct 14951069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 6186639 - 6186501
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    |||||||||| |||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||| ||  || |||||||| |||||||||||||    
T  6186639 aaatcttgtgtcaaaccgttgcaaaaccccttcaaaataattatcaaacttaccaaaaactcgtgtaatcgcactttacttctcttctgcagttgagcgc 6186540  T
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacctaaa 141  Q
    |||||||||  |||||||||||| ||||||||||||||||    
T  6186539 aattaagcaaatgtaaacaccca-aaaatcaccacctaaa 6186501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 38531726 - 38531603
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||| |||| |||||||||| ||||||||| ||||||||||| |||||||||| ||||||| | ||  |||||| |||| ||||||||||| |    
T  38531726 aaatcttgtgctaaactgttgcaaaac-cctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgcttttcttctgcagttgagcac 38531628  T
Q  102 aattaagcacgtgtaaacacccaaa 126  Q
    | |||||||| ||||||||||||||    
T  38531627 agttaagcacatgtaaacacccaaa 38531603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 9910375 - 9910470
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcg 100  Q
    ||||||| |||||||||||||||| | || |||||||| ||||| | |||||||||||||||||| |  |  ||| ||||||| ||||||||||||    
T  9910375 tcttgtgacaaaccgttgcaaaacccatcaaaaataactatcaatcctaccaaaaactcgtgtaaccgtactttgtttctcttctgcagttgagcg 9910470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 1533097 - 1533166
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatc 71  Q
    ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| |||| | |||||||    
T  1533097 aaatcttgtgccaaaccattaaaaaacctctccaaaataaccatcaaacttaccataaacccatgtaatc 1533166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 27888571 - 27888638
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 69  Q
    |||||||||| |||||| ||  |||||  |||||||||||||||| ||| |||||||||||| |||||    
T  27888571 aaatcttgtgtcaaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaa 27888638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 33544179 - 33544267
Alignment:
Q  30 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcacgtgtaaa 118  Q
    ||||||||||||||||||| | |||||||||| |||| |  | ||  |||||| |||| ||||||| | |||||||||| || ||||||    
T  33544179 cctccaaaataaccatcaaccctaccaaaaacccgtgcagccgcaccttgcttatcttctgcagttcaacgcaattaagaacatgtaaa 33544267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 24350555 - 24350420
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  24350555 aaattttgtgctaaaccgttgcaaaacccctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacacattgcttctcttctgtagttgagcgc 24350456  T
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacc 137  Q
    ||||||||||||||||||||||||||||||||||||    
T  24350455 aattaagcacgtgtaaacacccaaaaaatcaccacc 24350420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 24842943 - 24843068
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||| |||| ||||  |||| ||||||||| ||||||||||| |||||||||| ||||||| | ||  ||||||||||| |||||||||||||    
T  24842943 aaatcttgtgctaaactgttgttaaac-cctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgcttctcttctgcagttgagcgc 24843041  T
Q  102 aattaagcacgtgtaaacacccaaaaa 128  Q
    |||||||||| ||||||||||| ||||    
T  24843042 aattaagcacatgtaaacaccccaaaa 24843068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 30845178 - 30845287
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||  |  |||| | ||  ||||||||||| | |||||||||||    
T  30845178 aaatcttgtgtcaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaatccaggtaaccgcaccttgcttctcttctacagttgagcgc 30845277  T
Q  102 aattaagcac 111  Q
    | ||||||||    
T  30845278 agttaagcac 30845287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 10772653 - 10772717
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 69  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||    
T  10772653 tcttgtgccaaaccgttgcaaaacccatccaaaataaccatcaaacctaccaaaaacccgtgtaa 10772717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 9566640 - 9566689
Alignment:
Q  12 ccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 61  Q
    ||||||||||  |||||  |||||||||||||||||||| ||||||||||    
T  9566640 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaac 9566689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 14351559 - 14351424
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||  ||||||||||||    
T  14351559 aaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcacattgcttctcttcagcagttgagcgc 14351460  T
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacc 137  Q
    |||||||||| ||||||||||| |||||||||||||    
T  14351459 aattaagcacatgtaaacaccccaaaaatcaccacc 14351424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 10494593 - 10494709
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||||||||| ||||||||| |||  |||||||||||||||| |||||||||  ||||||| | ||  ||  ||||||| ||||||||||||     
T  10494593 aaatcttgtgccaaaccattgcaaaacccctataaaataaccatcaaacctaccaaaaatccgtgtaaccgcactttctttctcttctgcagttgagcgt 10494692  T
Q  102 aattaagcacgtgtaaa 118  Q
    | |||||||| ||||||    
T  10494693 agttaagcacatgtaaa 10494709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11814402 - 11814461
Alignment:
Q  1 taaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 60  Q
    ||||||||||||| ||| |||||||||| |||||||| |||||||||||| || ||||||    
T  11814402 taaatcttgtgcctaactgttgcaaaacccctccaaagtaaccatcaaacctagcaaaaa 11814461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 2077772 - 2077718
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaa 59  Q
    |||||||| ||||||||||||||| | |||||||||| |||||||| ||||||||    
T  2077772 tcttgtgcaaaaccgttgcaaaacccatccaaaataatcatcaaacctaccaaaa 2077718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 29099334 - 29099391
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaa 59  Q
    |||| |||||||| | ||||| |||||  |||||||||||||||||||||||||||||    
T  29099334 aaattttgtgccatatcgttgaaaaacctctccaaaataaccatcaaacttaccaaaa 29099391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 26842317 - 26842258
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 61  Q
    |||||||||| || ||||||| |||||  ||||||| |||||||||||| ||||||||||    
T  26842317 aaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaac 26842258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 25537507 - 25537572
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 69  Q
    |||||||||| || ||||||| |||||  ||||||  |||||||||||| |||||||||||| |||||    
T  25537507 aaatcttgtgtcataccgttgaaaaacctctccaa--taaccatcaaacctaccaaaaactcatgtaa 25537572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 52635440 - 52635581
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||| ||    
T  52635440 aaatcttgtgccaaatcgttgcaaaa-tcctccaaaataaccatcaaacctaccaaaaactcgtgtaatcacacattgcttctcttctgcaggtgagtgc 52635538  T
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacctaaaaaa 144  Q
    |||||| ||| |||||||| |||||||||||||||||| ||||    
T  52635539 aattaaacacatgtaaacaaccaaaaaatcaccacctagaaaa 52635581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 55728449 - 55728562
Alignment:
Q  30 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaa 129  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||  |||||| |||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  55728449 cctccaaaataaccatcaaacctaccaaaa-ctcgtgtaatcgcactttgcttttcttctgcagttgagcgcaattaaacacatgtaaacacccgaaaaa 55728547  T
Q  130 tcaccacctaaaaaa 144  Q
    |||||||||| ||||    
T  55728548 tcaccacctagaaaa 55728562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 45872920 - 45872979
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 61  Q
    ||||||||| | |||||||||||||||  |||||||||||||| ||||| ||||||||||    
T  45872920 aaatcttgtacgaaaccgttgcaaaacgtctccaaaataaccaccaaacctaccaaaaac 45872979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 12156035 - 12156177
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||  ||||||||||||    
T  12156035 aaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcaccttgcttctcttcagcagttgagcgc 12156134  T
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacctaaaaaa 144  Q
    |||||||||| | ||||||||| ||||||||||||||| ||||    
T  12156135 aattaagcacatttaaacaccccaaaaatcaccacctagaaaa 12156177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 40600234 - 40600128
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaat 104  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||   ||  ||||||||||| |||||||||||||| |    
T  40600234 tcttgtgccaaaccgttgcaaaacccgtccaaaataaccatcaaacctaccaaaaactcgtataactgcactttgcttctcttctgcagttgagcgcagt 40600135  T
Q  105 taagcac 111  Q
    |||||||    
T  40600134 taagcac 40600128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 11470627 - 11470724
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagc 99  Q
    ||||||||||||||||||||||||||| ||| ||||||| | ||||||| |||||||||||||||||| |||| |||| ||||||| |||| ||||||    
T  11470627 aaatcttgtgccaaaccgttgcaaaaccccttcaaaatagctatcaaacctaccaaaaactcgtgtaaccacacattgtttctcttttgcatttgagc 11470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 42269155 - 42269049
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaat 104  Q
    ||||||||||||| |||||||||| | ||||||||||||||||| | ||||||||||||| |||| | ||  ||||||||||| |||||||||||| | |    
T  42269155 tcttgtgccaaactgttgcaaaacccatccaaaataaccatcaatcctaccaaaaactcgggtaaccgcactttgcttctcttctgcagttgagcgtagt 42269056  T
Q  105 taagcac 111  Q
    |||||||    
T  42269055 taagcac 42269049  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 34574528 - 34574451
Alignment:
Q  30 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaa 107  Q
    ||||||||||||||||||||| ||||||||| ||||| || | ||  ||||||||||| | |||||||||||||||||    
T  34574528 cctccaaaataaccatcaaacctaccaaaaaatcgtgcaaccgcaccttgcttctcttctacagttgagcgcaattaa 34574451  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 30248411 - 30248493
Alignment:
Q  30 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcacg 112  Q
    |||| ||||||||| |||||| ||||||||| ||||| || |  |  ||||||||||| ||||||||||||||||||||||||    
T  30248411 cctctaaaataaccttcaaacctaccaaaaaatcgtgcaaccgtaccttgcttctcttctgcagttgagcgcaattaagcacg 30248493  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 42221193 - 42221274
Alignment:
Q  30 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcac 111  Q
    ||||||||||||| ||||||| ||||||||||| ||| || | ||  ||||||||| | ||||||||| ||| |||||||||    
T  42221193 cctccaaaataactatcaaacctaccaaaaacttgtgcaaccgcaccttgcttctcatctgcagttgaacgccattaagcac 42221274  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 24867435 - 24867387
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaac 50  Q
    |||||||||||||| |||||| ||| |  ||||||||||||||||||||    
T  24867435 aaatcttgtgccaatccgttgaaaatcctctccaaaataaccatcaaac 24867387  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 5515079 - 5515185
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaat 104  Q
    ||||||||||||| |||||||||  | ||||||||||||||||| | |||||||||| || |||| | ||  ||||||||||| |||||||||||||| |    
T  5515079 tcttgtgccaaactgttgcaaaatccatccaaaataaccatcaatcctaccaaaaacccgggtaaccgcactttgcttctcttctgcagttgagcgcagt 5515178  T
Q  105 taagcac 111  Q
    |||||||    
T  5515179 taagcac 5515185  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 3763341 - 3763285
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 61  Q
    |||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||||    
T  3763341 tcttgtgccaaaccattgcaaaactcatccaaaataatcatcaatcctaccaaaaac 3763285  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 10181859 - 10181917
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 60  Q
    ||||| ||||||||||||||  |||||  |||||||||| ||||||||| |||||||||    
T  10181859 aaatcatgtgccaaaccgttaaaaaacctctccaaaatagccatcaaacctaccaaaaa 10181917  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 15050385 - 15050320
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 69  Q
    |||||||||| || ||||||| |||||  ||||||  |||||||||||| |||||||||||| |||||    
T  15050385 aaatcttgtgtcataccgttgaaaaacctctccaa--taaccatcaaacctaccaaaaactcatgtaa 15050320  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 43048045 - 43047929
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgc 101  Q
    ||||||||||  ||||||||||||||  | ||||||||||||||||||| |||||||||   |||||| | ||  ||| ||||||| |||||||||||||    
T  43048045 aaatcttgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaacctaccaaaaatctgtgtaaccgcactttgtttctcttctgcagttgagcgc 43047946  T
Q  102 aattaagcacgtgtaaa 118  Q
    | ||||||||| |||||    
T  43047945 agttaagcacgagtaaa 43047929  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 24717805 - 24717911
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaat 104  Q
    ||||||||||||| |||||||||| | ||||||||||||||||| | |||||||||  |  |||| | ||  ||||||||||| |||||||||||||| |    
T  24717805 tcttgtgccaaacagttgcaaaacccatccaaaataaccatcaatcctaccaaaaaaccaggtaaccgcactttgcttctcttttgcagttgagcgcagt 24717904  T
Q  105 taagcac 111  Q
    |||||||    
T  24717905 taagcac 24717911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 26711929 - 26711981
Alignment:
Q  9 gtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 61  Q
    |||||||||||||| ||||  |||| |||||||||||||||| ||||||||||    
T  26711929 gtgccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaac 26711981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 32979015 - 32979074
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 61  Q
    |||||||||||||||| |||  |||||  ||||||||||||||||||||  |||||||||    
T  32979015 aaatcttgtgccaaactgttaaaaaacctctccaaaataaccatcaaacccaccaaaaac 32979074  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 21590884 - 21590826
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 60  Q
    ||||||||||||||||||| | ||||   |||||||||||||| ||||| |||||||||    
T  21590884 aaatcttgtgccaaaccgtagaaaaatctctccaaaataaccaacaaacctaccaaaaa 21590826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 34293850 - 34293802
Alignment:
Q  12 ccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 60  Q
    ||||||||||  |||||  |||||||||||||||||||| |||||||||    
T  34293850 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaa 34293802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 2757 - 2651
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaat 104  Q
    |||||||||||||||||||||| | | || ||||||| |||||| | |||||||||||| ||||| | ||  ||||||||||| ||||||| |||||  |    
T  2757 tcttgtgccaaaccgttgcaaatcccatctaaaataatcatcaatcctaccaaaaactcatgtaaccgcactttgcttctcttctgcagttcagcgcggt 2658  T
Q  105 taagcac 111  Q
    |||||||    
T  2657 taagcac 2651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 31698995 - 31699097
Alignment:
Q  5 tcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaat 104  Q
    ||||||| ||||| |||||||||| | |||||||||||||| || | |||||||||| ||||||| | ||   |||||||||| |||||||||||||| |    
T  31698995 tcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgcagt 31699094  T
Q  105 taa 107  Q
    |||    
T  31699095 taa 31699097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 52984634 - 52984592
Alignment:
Q  102 aattaagcacgtgtaaacacccaaaaaatcaccacctaaaaaa 144  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  52984634 aattaagcacatgtaaacaccaaaaaaatcaccacctaaaaaa 52984592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 46743234 - 46743173
Alignment:
Q  2 aaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactc 63  Q
    ||||||||||||||||| ||  |||||   ||||||||||||||||||| ||||||||||||    
T  46743234 aaatcttgtgccaaaccattaaaaaacctatccaaaataaccatcaaacctaccaaaaactc 46743173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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