View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_31 (Length: 228)
Name: NF0052_low_31
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 27194842 - 27194663
Alignment:
| Q |
7 |
agttcatcgtaaacttccaccaacgttggagtgagtcctcgacacggaccacaccatgatgctgaaaaatagaaaccaagtttctttcccttcaagttgt |
106 |
Q |
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| T |
27194842 |
agttcatcgtacacctccaccaactttggagtgaatcctcgacacggaccacaccatgatgctgaaaaatagaaaccaagtttctttcccttcaagctat |
27194743 |
T |
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| Q |
107 |
caatttttacctgtgaatttcaaaatatgagaaacagcaccacaatattccatcggtataagtacaaataaaactaccac |
186 |
Q |
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| T |
27194742 |
caattttaacctgtgaatttcaaaatataagaaatagcaccacaatattccatcggtataagtacaaataaaaccaccac |
27194663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 27210071 - 27209944
Alignment:
| Q |
7 |
agttcatcgtaaacttccaccaacgttggagtgagtcctcgacacggaccacaccatgatgctgaaaaatagaaaccaagtttctttcccttcaagttgt |
106 |
Q |
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||||||| ||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | |
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| T |
27210071 |
agttcattgtacacctccaccaacgttggagtgaatgatcgacacggaccacaccatgatgctgaaaaataaaaaccaagtttctttcccttcaagctat |
27209972 |
T |
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| Q |
107 |
caatttttacctgtgaatttcaaaatat |
134 |
Q |
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| T |
27209971 |
caatttttacctgtgaatctcaagatat |
27209944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 27194644 - 27194606
Alignment:
| Q |
182 |
accacaatgtccaataacaaaaacaccagaataaaccac |
220 |
Q |
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| T |
27194644 |
accacaatgtccaataagaaaaacactagaataaaccac |
27194606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 28392535 - 28392499
Alignment:
| Q |
129 |
aaatatgagaaacagcaccacaatattccatcggtat |
165 |
Q |
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| T |
28392535 |
aaatatgagaaatagcaccacaatatttcatcggtat |
28392499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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