View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_4 (Length: 392)
Name: NF0052_low_4
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Original strand, 38939542 - 38939896
Alignment:
| Q |
30 |
tttctctgttttgtaacccagctgagtttgagttctctttgcaccgatttcatttattgttttttccctcagtatctcttccttctttcacttaaatcaa |
129 |
Q |
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| T |
38939542 |
tttctctgttttgtaacccagctgagtttgagttctctttgcaccgatttcatttattgttttttccctcagtatctcttccttctttcacttaaatcaa |
38939641 |
T |
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| Q |
130 |
atcacatacatcttataatataaattttatgaaaattttaatcttatgcttacaaatcaaaatgaataatactacaaggccaactccgattcaatcaaaa |
229 |
Q |
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| T |
38939642 |
atcacatacatcttataatataaattttatgaaa-ttttaatcttatgcttactattcaaaatgaataatactacaaggccaactccgattcaatcaaaa |
38939740 |
T |
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| Q |
230 |
atactcgcgaatgttgaagcttgtactggctggtgccagctcatattctctaacaaactcgatgaagtagttacaccagtgggatatataaagttctctg |
329 |
Q |
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| T |
38939741 |
atactcgcgaatgttgaagcttgtactggctggtgccagctcatattctctaacaaactcgatgaagtagttacaccagtgggatatataaagttctctg |
38939840 |
T |
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| Q |
330 |
ttcccacttcttcaacattcatcgagaattccttcaatcaccgttgcttcatctca |
385 |
Q |
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| T |
38939841 |
ttcccacttcttcaacattcatcgagaattccttcaatcaccgttgcttcatctca |
38939896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 55760104 - 55759952
Alignment:
| Q |
30 |
tttctctgttttgtaacccagctgagtttgagttctctttgcaccgatttcatttattgttttttccctcagtatctcttccttc-tttcacttaaatca |
128 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
55760104 |
tttctctgttttgtaacccatctgagtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcacttaaatca |
55760005 |
T |
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| Q |
129 |
aatcac--atacatcttataa-tataaattttatgaaaattttaatcttatgctt |
180 |
Q |
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||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| |
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| T |
55760004 |
tatcacatatacatcttataactattaattttatgaaa--tttaatcttatgctt |
55759952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 55759865 - 55759809
Alignment:
| Q |
297 |
tagttacaccagtgggatatataaagttctctgttcccacttcttcaacattcatcg |
353 |
Q |
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| T |
55759865 |
tagttacaccagtgggatatataaagttctcagttccctcttcttcaacattcatcg |
55759809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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