View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0052_low_7 (Length: 320)
Name: NF0052_low_7
Description: NF0052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0052_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 28214603 - 28214810
Alignment:
| Q |
1 |
ctatacccaacttgttctcggccattgagaaggaagcgtcgacattgcacttgagccttccacgccgcggttggaaattgtttatcatttgtattttatt |
100 |
Q |
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| T |
28214603 |
ctatacccaacttgttctcggccattgagaaggaagcgccgacattgcacttgagacttccacaccgcggttggaaattgtttatcatttgtattttatt |
28214702 |
T |
|
| Q |
101 |
gttttgttaggaatttggtgttgttgtagaaca--atatatataatcatatgcctttggtgagacaagtatgagaatagtctatgaaataatgaaactat |
198 |
Q |
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| T |
28214703 |
gttttgttaggaatttggtgttgttgtagaacaatatatatataatcatatgcctttggtgagacaagtatgagaatagtctatgaaataatgaaactat |
28214802 |
T |
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| Q |
199 |
ctcttgat |
206 |
Q |
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|||||||| |
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| T |
28214803 |
ctcttgat |
28214810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39533449 - 39533378
Alignment:
| Q |
1 |
ctatacccaacttgttctcggccattgagaaggaagcgtcgacattgcacttgagccttccacgccgcggtt |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39533449 |
ctatacccaacttgttctcggccattgagaaggaagcgtcgacaatgcacttgagccttccacgccgcggtt |
39533378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18748350 - 18748279
Alignment:
| Q |
1 |
ctatacccaacttgttctcggccattgagaaggaagcgtcgacattgcacttgagccttccacgccgcggtt |
72 |
Q |
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||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18748350 |
ctatatccaacttgttctcggtcattgagaaggacgcgtcgacattgcacttgagccttccacgccgcggtt |
18748279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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