View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0053_high_15 (Length: 233)

Name: NF0053_high_15
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0053_high_15
NF0053_high_15
[»] chr5 (2 HSPs)
chr5 (1-211)||(27313899-27314096)
chr5 (14-58)||(24137650-24137693)
[»] chr6 (4 HSPs)
chr6 (9-56)||(28064681-28064728)
chr6 (95-136)||(10740746-10740787)
chr6 (91-137)||(18792736-18792782)
chr6 (91-133)||(21858213-21858255)
[»] chr3 (2 HSPs)
chr3 (66-133)||(2593010-2593076)
chr3 (94-137)||(29554669-29554712)
[»] chr7 (3 HSPs)
chr7 (4-39)||(11827948-11827983)
chr7 (93-135)||(46964313-46964355)
chr7 (66-111)||(21812626-21812671)
[»] chr4 (2 HSPs)
chr4 (93-136)||(24131938-24131981)
chr4 (93-135)||(16869684-16869726)
[»] scaffold0511 (1 HSPs)
scaffold0511 (91-137)||(11359-11405)
[»] chr2 (1 HSPs)
chr2 (93-135)||(8985748-8985790)
[»] chr1 (1 HSPs)
chr1 (66-107)||(9253288-9253329)
[»] chr8 (1 HSPs)
chr8 (9-56)||(43516173-43516218)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27313899 - 27314096
Alignment:
Q  1 cgagcctattagtttagagtctattaggttttatatatatattctctggtaaccttctctagtaatctttgttattctctattgaaaccatatattgtta 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||             |||||||||||||||||||||||||||||| |||||||||||    
T  27313899 cgagcctattagtttagagtttattaggttttatatatatattct-------------ctagtaatctttgttattctctattgaaactatatattgtta 27313985  T
Q  101 acatggtatcaagagctttgtttgatcctccttgaacattttgcatcttttccgctgttgttttcccaaaaccaaaaatttgggaatgtgtttgtttggc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27313986 acatggtatcaagagctttgttcgatcctccttgaacattttgcatcttttccgctgttgttttcccaaaaccaaaaatttgggaatgtgtttgtttggc 27314085  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 24137650 - 24137693
Alignment:
Q  14 ttagagtctattaggttttatatatatattctctggtaaccttct 58  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||    
T  24137650 ttagagtctattaggttttat-tatatattctcttataaccttct 24137693  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 28064728 - 28064681
Alignment:
Q  9 ttagtttagagtctattaggttttatatatatattctctggtaacctt 56  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  28064728 ttagtttagagtccattaggttttatatttatattctctagtaacctt 28064681  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 10740746 - 10740787
Alignment:
Q  95 ttgttaacatggtatcaagagctttgtttgatcctccttgaa 136  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaa 10740787  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 18792782 - 18792736
Alignment:
Q  91 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 137  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  18792782 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 18792736  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 21858213 - 21858255
Alignment:
Q  91 tatattgttaacatggtatcaagagctttgtttgatcctcctt 133  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  21858213 tatatagttaacatggtatcaagagcttgatttgatcctcctt 21858255  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 2593076 - 2593010
Alignment:
Q  66 tctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctcctt 133  Q
    |||||||||||||||||||||||| || |||||||||||| |||  |||||||  |||||||||||||    
T  2593076 tctttgttattctctattgaaaccctagattgttaacatgatat-tagagcttgttttgatcctcctt 2593010  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 29554669 - 29554712
Alignment:
Q  94 attgttaacatggtatcaagagctttgtttgatcctccttgaac 137  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29554669 attgttaacatggtatcaaaagctttgttcgatccaccttgaac 29554712  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 11827983 - 11827948
Alignment:
Q  4 gcctattagtttagagtctattaggttttatatata 39  Q
    |||||||||||||||||| |||||||||||||||||    
T  11827983 gcctattagtttagagtcaattaggttttatatata 11827948  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 46964355 - 46964313
Alignment:
Q  93 tattgttaacatggtatcaagagctttgtttgatcctccttga 135  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  46964355 tattgttaacatggtatcaagagcgtggtttgaccctccttga 46964313  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 21812626 - 21812671
Alignment:
Q  66 tctttgttattctctattgaaaccatatattgttaacatggtatca 111  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||    
T  21812626 tctttgttattctcttttgaaatattatattgttaacatggtatca 21812671  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 24131938 - 24131981
Alignment:
Q  93 tattgttaacatggtatcaagagctttgtttgatcctccttgaa 136  Q
    ||||||||||||||||||||||||||  |||||||| |||||||    
T  24131938 tattgttaacatggtatcaagagcttgttttgatccaccttgaa 24131981  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 16869684 - 16869726
Alignment:
Q  93 tattgttaacatggtatcaagagctttgtttgatcctccttga 135  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  16869684 tattgttaacatggtatcaagagcgtggtttgaccctccttga 16869726  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 11359 - 11405
Alignment:
Q  91 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 137  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  11359 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 11405  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 8985748 - 8985790
Alignment:
Q  93 tattgttaacatggtatcaagagctttgtttgatcctccttga 135  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  8985748 tattgttaacatggtatcaagagcgtggtttgaccctccttga 8985790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 9253329 - 9253288
Alignment:
Q  66 tctttgttattctctattgaaaccatatattgttaacatggt 107  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  9253329 tctttgttattctctattgaaaccttgttttgttaacatggt 9253288  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 43516173 - 43516218
Alignment:
Q  9 ttagtttagagtctattaggttttatatatatattctctggtaacctt 56  Q
    ||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  43516173 ttagtttagagtccattaggttt--tatatatattctctagtaacctt 43516218  T

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