View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0053_high_7 (Length: 278)

Name: NF0053_high_7
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0053_high_7
NF0053_high_7
[»] chr5 (2 HSPs)
chr5 (54-278)||(27313851-27314062)
chr5 (115-159)||(24137650-24137693)
[»] chr7 (3 HSPs)
chr7 (71-140)||(11827948-11828017)
chr7 (194-236)||(46964313-46964355)
chr7 (167-212)||(21812626-21812671)
[»] chr8 (1 HSPs)
chr8 (71-157)||(43516134-43516218)
[»] chr6 (4 HSPs)
chr6 (110-157)||(28064681-28064728)
chr6 (196-237)||(10740746-10740787)
chr6 (192-238)||(18792736-18792782)
chr6 (192-234)||(21858213-21858255)
[»] chr3 (2 HSPs)
chr3 (167-234)||(2593010-2593076)
chr3 (195-238)||(29554669-29554712)
[»] chr4 (2 HSPs)
chr4 (194-237)||(24131938-24131981)
chr4 (194-236)||(16869684-16869726)
[»] scaffold0511 (1 HSPs)
scaffold0511 (192-238)||(11359-11405)
[»] chr2 (1 HSPs)
chr2 (194-236)||(8985748-8985790)
[»] chr1 (2 HSPs)
chr1 (71-141)||(30435617-30435687)
chr1 (167-208)||(9253288-9253329)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 54 - 278
Target Start/End: Original strand, 27313851 - 27314062
Alignment:
Q  54 gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctctggtaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           
T  27313851 gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtttattaggttttatatatatattct------- 27313943  T
Q  154 ccttctctagtaatctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctccttgaacattttgcatcttttc 253  Q
          |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27313944 ------ctagtaatctttgttattctctattgaaactatatattgttaacatggtatcaagagctttgttcgatcctccttgaacattttgcatcttttc 27314037  T
Q  254 cgctgttgttttcccaaaaccaaaa 278  Q
    |||||||||||||||||||||||||    
T  27314038 cgctgttgttttcccaaaaccaaaa 27314062  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 24137650 - 24137693
Alignment:
Q  115 ttagagtctattaggttttatatatatattctctggtaaccttct 159  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||    
T  24137650 ttagagtctattaggttttat-tatatattctcttataaccttct 24137693  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 11828017 - 11827948
Alignment:
Q  71 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatata 140  Q
    |||| |||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||||    
T  11828017 tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatatata 11827948  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 46964355 - 46964313
Alignment:
Q  194 tattgttaacatggtatcaagagctttgtttgatcctccttga 236  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  46964355 tattgttaacatggtatcaagagcgtggtttgaccctccttga 46964313  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 21812626 - 21812671
Alignment:
Q  167 tctttgttattctctattgaaaccatatattgttaacatggtatca 212  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||    
T  21812626 tctttgttattctcttttgaaatattatattgttaacatggtatca 21812671  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 43516134 - 43516218
Alignment:
Q  71 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctctggtaacctt 157  Q
    |||| ||||||||| |||||||||||||||  |  ||| ||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  43516134 tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttt--tatatatattctctagtaacctt 43516218  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 28064728 - 28064681
Alignment:
Q  110 ttagtttagagtctattaggttttatatatatattctctggtaacctt 157  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  28064728 ttagtttagagtccattaggttttatatttatattctctagtaacctt 28064681  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 10740746 - 10740787
Alignment:
Q  196 ttgttaacatggtatcaagagctttgtttgatcctccttgaa 237  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaa 10740787  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 18792782 - 18792736
Alignment:
Q  192 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 238  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  18792782 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 18792736  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 21858213 - 21858255
Alignment:
Q  192 tatattgttaacatggtatcaagagctttgtttgatcctcctt 234  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  21858213 tatatagttaacatggtatcaagagcttgatttgatcctcctt 21858255  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 2593076 - 2593010
Alignment:
Q  167 tctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctcctt 234  Q
    |||||||||||||||||||||||| || |||||||||||| |||  |||||||  |||||||||||||    
T  2593076 tctttgttattctctattgaaaccctagattgttaacatgatat-tagagcttgttttgatcctcctt 2593010  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 29554669 - 29554712
Alignment:
Q  195 attgttaacatggtatcaagagctttgtttgatcctccttgaac 238  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29554669 attgttaacatggtatcaaaagctttgttcgatccaccttgaac 29554712  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 24131938 - 24131981
Alignment:
Q  194 tattgttaacatggtatcaagagctttgtttgatcctccttgaa 237  Q
    ||||||||||||||||||||||||||  |||||||| |||||||    
T  24131938 tattgttaacatggtatcaagagcttgttttgatccaccttgaa 24131981  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 16869684 - 16869726
Alignment:
Q  194 tattgttaacatggtatcaagagctttgtttgatcctccttga 236  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  16869684 tattgttaacatggtatcaagagcgtggtttgaccctccttga 16869726  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 11359 - 11405
Alignment:
Q  192 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 238  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  11359 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 11405  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 8985748 - 8985790
Alignment:
Q  194 tattgttaacatggtatcaagagctttgtttgatcctccttga 236  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  8985748 tattgttaacatggtatcaagagcgtggtttgaccctccttga 8985790  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 30435617 - 30435687
Alignment:
Q  71 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat 141  Q
    |||| ||||||||||||||| |||||||||  | |||| |  |||||||||  ||||||||||||||||||    
T  30435617 tgttagataataaagtaatgagctatgctattgggcctgtcggtttagagttcattaggttttatatatat 30435687  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 9253329 - 9253288
Alignment:
Q  167 tctttgttattctctattgaaaccatatattgttaacatggt 208  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  9253329 tctttgttattctctattgaaaccttgttttgttaacatggt 9253288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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