View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0053_low_1 (Length: 885)
Name: NF0053_low_1
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 642; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 88 - 832
Target Start/End: Original strand, 32535049 - 32535792
Alignment:
| Q |
88 |
tgggtagtttatatagggtgtatgtctcctaaagagtaacggaggtgtgcgaaggaaggctcaaactaagattttgcttgtgagcgtaatggtataagtc |
187 |
Q |
| |
|
|||||||||||| | ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32535049 |
tgggtagtttatctggggcggatgcctcctaaagagtaacggaggtgtgcgaaggaaggctcaaactaagattttgcttgtgatcgtaatggtataagtc |
32535148 |
T |
|
| Q |
188 |
tgcttgactgtgagaccgagtgcgcgtgatggtacaagtcttcctgattgaactggttagtgttgacatagacatttatatattatccaccaacgaaatg |
287 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
32535149 |
tgcttgactgtgagaccgagtgctcgtgacggtacaagtctttctgactggactggttagtgttgacatagacatttatatattatccgccaatgaaatg |
32535248 |
T |
|
| Q |
288 |
aattctcatatgctaagcaaaattcaaactactccaaattaagttgagtacattattgtgagatttgagttaagttcttatgaattgatccaacttatat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32535249 |
aattctcatatgctaagcaaaattcaaactactccaaattaagttgagtacattattgtgagatttgagttaagtttttatgaattgatccaacttatat |
32535348 |
T |
|
| Q |
388 |
tgacaataaaatgttcattgtcattgaagaaaaaacttgttgaaatttggaatactaagaaagcgacaagatggaaaagaaatctacaattcattattga |
487 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32535349 |
tgacagtaaaatgttcattgtcattgaagaaaaaacttgttgaaatttggaatactaagaaagcgacaagatggaaaagaaatctacaattcattattga |
32535448 |
T |
|
| Q |
488 |
acatagcattgtctttatcaagattctagagccaatggttctcattggacgttaggtgggtttgctttcaa-ttcaatgcatctccaatcccaattaatc |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32535449 |
acatagcattgtctttatcaagattctagagccaatggttctcattggacgttaggtggttttgctttcaatttcaatgcatctccaatcccaattaatc |
32535548 |
T |
|
| Q |
587 |
aatttcttcaaccctagttgatcaaataattgtacaacattatcttcaatttcaatcgattctaaaatcacagaccattagaatccaatccaactccaag |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32535549 |
aatttcttcaaccctagttgatcaaataattgtacaacattatcttcaatttcaatcaattctaaaatcacagacca-tagaatccaatccaactccaag |
32535647 |
T |
|
| Q |
687 |
ccattttcacattgtccagaaaaactatatcactatttaaaatgggtgaaccaaatgagagcacataaatgatcatatatactttcaatccgaatcacat |
786 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32535648 |
ccgttttcacattgtccagaaaaactatatcactatttaaaatgggtgaaccaaatgagagcacataaatgatcatatttactttcaatccgaatcacat |
32535747 |
T |
|
| Q |
787 |
gaacggggatcatatactaaaatagataaaatctatctgtgtgtga |
832 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32535748 |
gaa-tgggatcatatactaaaatagataaaatctatctgtgtgtga |
32535792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 275 - 574
Target Start/End: Original strand, 32529839 - 32530132
Alignment:
| Q |
275 |
caccaacgaaatgaattctcatatgctaagcaaaattcaaactactccaaattaagttgagtacattattgtgagatttgagttaagttcttatgaattg |
374 |
Q |
| |
|
|||||| ||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||| |||| |
|
|
| T |
32529839 |
caccaatgaaataaattatcatttgctaagccaaattcaaactacttcaaattaagttgagtacattattgtgagatttgaattgagt--------attg |
32529930 |
T |
|
| Q |
375 |
atccaacttatattgacaataaaatgttca-ttgtcattgaagaaaaaacttgttgaaatttggaatactaagaaagcgac-aagatggaaaag-aaatc |
471 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||| |||| | | ||| ||||| |
|
|
| T |
32529931 |
atccaacttacgttgccaataaaatgttcatttgtcattgaagaaaaaactacttgaaagttggaatactaagaaagtgacaaagaggaataagaaaatc |
32530030 |
T |
|
| Q |
472 |
tacaattcattattgaacatagcattgtctttatcaagattctagagccaatggttctcattggacgttaggtgggtttgctttcaa-ttcaatgcatct |
570 |
Q |
| |
|
| |||||||| | ||| |||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
32530031 |
t--aattcattgtagaatatagcaatgtctttatcaagaatctagagccaatagttttcattggacgttaggtgggtttactttcaatttcaatacatct |
32530128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 32529673 - 32529775
Alignment:
| Q |
88 |
tgggtagtttatatagggtgtatgtctcctaa---agagtaacggaggtgtgcgaaggaaggctcaaactaagattttgcttgtgagcgtaatggtataa |
184 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
32529673 |
tgggtagtttatctggggtgtatgcctcctaataaagagtaacgaaggtatgcgaaggaaggctcaagctaagattttgcttgtgagcgtaatggtacaa |
32529772 |
T |
|
| Q |
185 |
gtc |
187 |
Q |
| |
|
||| |
|
|
| T |
32529773 |
gtc |
32529775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 36226777 - 36226849
Alignment:
| Q |
88 |
tgggtagtttatatagggtgtatgtctcctaaagagtaacggaggtgtgcgaaggaaggctcaaactaagatt |
160 |
Q |
| |
|
|||||||||||| | || | ||| |||||||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
36226777 |
tgggtagtttatctgggacggatgcctcctaaagagtaacgaaggtgtgcgaaggtaggctcaagctaagatt |
36226849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 875 times since January 2019
Visitors: 1286