View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_10 (Length: 366)
Name: NF0053_low_10
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 45240543 - 45240667
Alignment:
| Q |
191 |
cgtccaattttggatgtggcactaggagcatcaatatcgtatgtatattgtcgtggctccacaatattcaatgtctttgtgttagaatgtcttagataat |
290 |
Q |
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| T |
45240543 |
cgtccaactttggatgtggcactaggagcatcaatatcgtatgtatattgtcgtggctccacaatattcaatgtctttatgttagaatgtcttagataat |
45240642 |
T |
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| Q |
291 |
tggcattgaagaatggtagccaaac |
315 |
Q |
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| T |
45240643 |
tggcattgaagaatggtagccaaac |
45240667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 23869652 - 23869758
Alignment:
| Q |
209 |
gcactaggagcatcaatatcgtatgtatattgtcgtggctccacaatattcaatgtctttgtgttagaatgtcttagataattggcattgaagaatggta |
308 |
Q |
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| T |
23869652 |
gcactaagagcatcaatatcgcatgtatattgtcgtggctacacaataaccagtgactttatgtcagaatatcttagataattggcattggagaagagta |
23869751 |
T |
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| Q |
309 |
gccaaac |
315 |
Q |
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| T |
23869752 |
gccaaac |
23869758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 18565565 - 18565630
Alignment:
| Q |
250 |
cacaatattcaatgtctttgtgttagaatgtcttagataattggcattgaagaatggtagccaaac |
315 |
Q |
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| T |
18565565 |
cacaataaccaatgtctttgtgtcacaatatcttggataattggcattgaagaagagtagccaaac |
18565630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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