View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_12 (Length: 312)
Name: NF0053_low_12
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 679831 - 680076
Alignment:
| Q |
1 |
tcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcag |
100 |
Q |
| |
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| T |
679831 |
tcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcag |
679930 |
T |
|
| Q |
101 |
caataagagaatnnnnnnncttacagaggcatcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaa |
200 |
Q |
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| T |
679931 |
caataagagaataaaaaaacttacagaggcatcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaa |
680030 |
T |
|
| Q |
201 |
gtggcggcggagatgttatggttccagccgtatggatgatgatgtc |
246 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
680031 |
gtggtggcggagatgttatggttccagccgtatggacgatgatgtc |
680076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 747750 - 747999
Alignment:
| Q |
2 |
catactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
747750 |
catactcaactaactcagccaagttgttccaagaggttatcatgaggtggtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagc |
747849 |
T |
|
| Q |
102 |
aataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtg |
196 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
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| T |
747850 |
aataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtg |
747949 |
T |
|
| Q |
197 |
ggaagtggcggcggagatgttatggttccagccgtatggatgatgatgtc |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
747950 |
ggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtc |
747999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 9595258 - 9595361
Alignment:
| Q |
9 |
aactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataaga |
108 |
Q |
| |
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|||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| ||||||| |
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| T |
9595258 |
aactaaatcagccaagttgttcatagaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatcagaaataaga |
9595357 |
T |
|
| Q |
109 |
gaat |
112 |
Q |
| |
|
|||| |
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|
| T |
9595358 |
gaat |
9595361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 755292 - 755445
Alignment:
| Q |
37 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
136 |
Q |
| |
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|||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| |||||||||||| || | |
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| T |
755292 |
gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca |
755391 |
T |
|
| Q |
137 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga |
185 |
Q |
| |
|
| || ||||||||||||||| ||||| ||||||||||| |||||||||| |
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|
| T |
755392 |
gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga |
755445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 201
Target Start/End: Complemental strand, 2476051 - 2475887
Alignment:
| Q |
42 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
140 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||| |||||| ||||| ||||| || |
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| T |
2476051 |
catgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgt |
2475952 |
T |
|
| Q |
141 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
201 |
Q |
| |
|
||||||||| || |||||| ||||||||||| |||||||| ||| ||||||||||||| |
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|
| T |
2475951 |
acgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag |
2475887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 2474516 - 2474346
Alignment:
| Q |
37 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
136 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||||| |||||||||||| | |||| | ||| | ||||| |||||||||||| |||| |
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| T |
2474516 |
gttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcaccgaa |
2474417 |
T |
|
| Q |
137 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagt |
202 |
Q |
| |
|
| || ||||||||| ||||| ||||| |||||||||||| |||| ||| ||| |||||||||||||| |
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|
| T |
2474416 |
gctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt |
2474346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
| Q |
37 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
136 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||| ||||||| |
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|
| T |
7334931 |
gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa |
7335030 |
T |
|
| Q |
137 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
201 |
Q |
| |
|
| || ||||||| | |||| ||||| ||||||||||| |||||||| || ||||||| ||||| |
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|
| T |
7335031 |
gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag |
7335100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 9562612 - 9562672
Alignment:
| Q |
26 |
tgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc |
86 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
9562612 |
tgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc |
9562672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
| Q |
37 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
136 |
Q |
| |
|
|||| |||||||| |||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| ||| |||||||| |||| |
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|
| T |
9566482 |
gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa |
9566581 |
T |
|
| Q |
137 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
201 |
Q |
| |
|
| || ||||||| ||||||| ||||| ||||||||||| | |||||||||| ||||||| ||||| |
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|
| T |
9566582 |
gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag |
9566651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 7443641 - 7443823
Alignment:
| Q |
24 |
gttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnnctta |
123 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| |||| | ||| ||||||| ||||||||| ||||| | ||||||| ||| | ||||| |||| |
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|
| T |
7443641 |
gttgttcctagaggttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaactta |
7443740 |
T |
|
| Q |
124 |
cagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
201 |
Q |
| |
|
|||||||| |||||||| ||||||| | |||| ||| | ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7443741 |
cagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag |
7443823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
| Q |
45 |
gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- |
140 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | ||||| |||||||||||| ||||| || |
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|
| T |
7325065 |
gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg |
7325164 |
T |
|
| Q |
141 |
-gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
201 |
Q |
| |
|
||||||| | |||| ||| | |||||||||||| | ||||||||| ||||||| ||||| |
|
|
| T |
7325165 |
agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag |
7325226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
| Q |
179 |
acatcgaagagaagagtgggaagtggcggcggagatgttatggtt |
223 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2634905 |
acatcgaacggaagagtcggaagtggcggcggagatgttatggtt |
2634861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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