View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0053_low_14 (Length: 295)

Name: NF0053_low_14
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0053_low_14
NF0053_low_14
[»] chr5 (2 HSPs)
chr5 (71-295)||(27313851-27314062)
chr5 (132-176)||(24137650-24137693)
[»] chr7 (3 HSPs)
chr7 (88-157)||(11827948-11828017)
chr7 (211-253)||(46964313-46964355)
chr7 (184-229)||(21812626-21812671)
[»] chr8 (1 HSPs)
chr8 (88-174)||(43516134-43516218)
[»] chr6 (4 HSPs)
chr6 (127-174)||(28064681-28064728)
chr6 (213-254)||(10740746-10740787)
chr6 (209-255)||(18792736-18792782)
chr6 (209-251)||(21858213-21858255)
[»] chr3 (2 HSPs)
chr3 (184-251)||(2593010-2593076)
chr3 (212-255)||(29554669-29554712)
[»] chr4 (2 HSPs)
chr4 (211-254)||(24131938-24131981)
chr4 (211-253)||(16869684-16869726)
[»] scaffold0511 (1 HSPs)
scaffold0511 (209-255)||(11359-11405)
[»] chr2 (1 HSPs)
chr2 (211-253)||(8985748-8985790)
[»] chr1 (2 HSPs)
chr1 (88-158)||(30435617-30435687)
chr1 (184-225)||(9253288-9253329)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 71 - 295
Target Start/End: Original strand, 27313851 - 27314062
Alignment:
Q  71 gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctctggtaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           
T  27313851 gattgaaacctaatccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtttattaggttttatatatatattct------- 27313943  T
Q  171 ccttctctagtaatctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctccttgaacattttgcatcttttc 270  Q
          |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27313944 ------ctagtaatctttgttattctctattgaaactatatattgttaacatggtatcaagagctttgttcgatcctccttgaacattttgcatcttttc 27314037  T
Q  271 cgctgttgttttcccaaaaccaaaa 295  Q
    |||||||||||||||||||||||||    
T  27314038 cgctgttgttttcccaaaaccaaaa 27314062  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 24137650 - 24137693
Alignment:
Q  132 ttagagtctattaggttttatatatatattctctggtaaccttct 176  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||    
T  24137650 ttagagtctattaggttttat-tatatattctcttataaccttct 24137693  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 11828017 - 11827948
Alignment:
Q  88 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatata 157  Q
    |||| |||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||||    
T  11828017 tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatatata 11827948  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 46964355 - 46964313
Alignment:
Q  211 tattgttaacatggtatcaagagctttgtttgatcctccttga 253  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  46964355 tattgttaacatggtatcaagagcgtggtttgaccctccttga 46964313  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 21812626 - 21812671
Alignment:
Q  184 tctttgttattctctattgaaaccatatattgttaacatggtatca 229  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||    
T  21812626 tctttgttattctcttttgaaatattatattgttaacatggtatca 21812671  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 43516134 - 43516218
Alignment:
Q  88 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatattctctggtaacctt 174  Q
    |||| ||||||||| |||||||||||||||  |  ||| ||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  43516134 tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttt--tatatatattctctagtaacctt 43516218  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 28064728 - 28064681
Alignment:
Q  127 ttagtttagagtctattaggttttatatatatattctctggtaacctt 174  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  28064728 ttagtttagagtccattaggttttatatttatattctctagtaacctt 28064681  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 10740746 - 10740787
Alignment:
Q  213 ttgttaacatggtatcaagagctttgtttgatcctccttgaa 254  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaa 10740787  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 18792782 - 18792736
Alignment:
Q  209 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 255  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  18792782 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 18792736  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 21858213 - 21858255
Alignment:
Q  209 tatattgttaacatggtatcaagagctttgtttgatcctcctt 251  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  21858213 tatatagttaacatggtatcaagagcttgatttgatcctcctt 21858255  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 2593076 - 2593010
Alignment:
Q  184 tctttgttattctctattgaaaccatatattgttaacatggtatcaagagctttgtttgatcctcctt 251  Q
    |||||||||||||||||||||||| || |||||||||||| |||  |||||||  |||||||||||||    
T  2593076 tctttgttattctctattgaaaccctagattgttaacatgatat-tagagcttgttttgatcctcctt 2593010  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 29554669 - 29554712
Alignment:
Q  212 attgttaacatggtatcaagagctttgtttgatcctccttgaac 255  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||    
T  29554669 attgttaacatggtatcaaaagctttgttcgatccaccttgaac 29554712  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 24131938 - 24131981
Alignment:
Q  211 tattgttaacatggtatcaagagctttgtttgatcctccttgaa 254  Q
    ||||||||||||||||||||||||||  |||||||| |||||||    
T  24131938 tattgttaacatggtatcaagagcttgttttgatccaccttgaa 24131981  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 16869684 - 16869726
Alignment:
Q  211 tattgttaacatggtatcaagagctttgtttgatcctccttga 253  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  16869684 tattgttaacatggtatcaagagcgtggtttgaccctccttga 16869726  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 11359 - 11405
Alignment:
Q  209 tatattgttaacatggtatcaagagctttgtttgatcctccttgaac 255  Q
    |||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  11359 tatattgttaacattgtatgaagagctttgttcgatccgccttgaac 11405  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 8985748 - 8985790
Alignment:
Q  211 tattgttaacatggtatcaagagctttgtttgatcctccttga 253  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  8985748 tattgttaacatggtatcaagagcgtggtttgaccctccttga 8985790  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 30435617 - 30435687
Alignment:
Q  88 tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat 158  Q
    |||| ||||||||||||||| |||||||||  | |||| |  |||||||||  ||||||||||||||||||    
T  30435617 tgttagataataaagtaatgagctatgctattgggcctgtcggtttagagttcattaggttttatatatat 30435687  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 9253329 - 9253288
Alignment:
Q  184 tctttgttattctctattgaaaccatatattgttaacatggt 225  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  9253329 tctttgttattctctattgaaaccttgttttgttaacatggt 9253288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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