View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0053_low_2 (Length: 653)
Name: NF0053_low_2
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0053_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 230408 - 230220
Alignment:
| Q |
109 |
aagatgggcacacatcatatagttttggtggtaattggtttgatctgcgttgtgttttccagcgtaggagcccaacaagctccatccacctccccaaact |
208 |
Q |
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| T |
230408 |
aagatgggcacacatcatatagttttggttgtaattggtttgatctgcgttgtgttttccagcgtaggagcccaacaagctccatccacctccccaaact |
230309 |
T |
|
| Q |
209 |
catctccagcaccacccactcctccttctaatacacccccaaccactcctcaagcctcccctccacctgttcaatcttctcctccaccc |
297 |
Q |
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| T |
230308 |
catctccagcaccacccactcctcctgctaatacacccccaaccactcctcaagcctcccctccacctgttcaatcttctcctccaccc |
230220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 378 - 476
Target Start/End: Complemental strand, 230139 - 230041
Alignment:
| Q |
378 |
acctgttcagcaatctcctcctccaaccccactcactcctccacctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccatt |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230139 |
acctgttcagcaatctcctcctccaaccccactcactcctccacctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccatt |
230041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 591 - 653
Target Start/End: Complemental strand, 229926 - 229864
Alignment:
| Q |
591 |
tgccaagcttaagagtaaagcccctgcattgtcacctgtgctctcgccatcagatgcgcccgc |
653 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
229926 |
tgccaagcttaagagtaaagcccctgcattggcacctgtgctctcgccatcagatgctcccgc |
229864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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