View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0053_low_22 (Length: 242)

Name: NF0053_low_22
Description: NF0053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0053_low_22
NF0053_low_22
[»] chr5 (1 HSPs)
chr5 (14-242)||(27313881-27314096)
[»] chr3 (2 HSPs)
chr3 (92-159)||(2593010-2593076)
chr3 (88-131)||(29554669-29554712)
[»] chr6 (4 HSPs)
chr6 (89-130)||(10740746-10740787)
chr6 (88-134)||(18792736-18792782)
chr6 (92-134)||(21858213-21858255)
chr6 (178-216)||(28064690-28064728)
[»] chr7 (3 HSPs)
chr7 (186-242)||(11827948-11828004)
chr7 (90-132)||(46964313-46964355)
chr7 (114-159)||(21812626-21812671)
[»] chr4 (2 HSPs)
chr4 (89-132)||(24131938-24131981)
chr4 (90-132)||(16869684-16869726)
[»] scaffold0511 (1 HSPs)
scaffold0511 (88-134)||(11359-11405)
[»] chr2 (1 HSPs)
chr2 (90-132)||(8985748-8985790)
[»] chr1 (1 HSPs)
chr1 (118-159)||(9253288-9253329)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 27314096 - 27313881
Alignment:
Q  14 atcatcaaaaagccaaacaaacacattcccaaattttcggttttgggaaaacaacagcggaaaagatgcaaagtgttcaaggaggatcaaacaaagctct 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  27314096 atcatcaaaaagccaaacaaacacattcccaaatttttggttttgggaaaacaacagcggaaaagatgcaaaatgttcaaggaggatcgaacaaagctct 27313997  T
Q  114 tgataccatgttaacaatatatggtttcaatagagaataacaaagattactagagaaggatgccagagaatatatatataaaacctaatagactctaaac 213  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||             |||||||||||||||||||||||| |||||||||    
T  27313996 tgataccatgttaacaatatatagtttcaatagagaataacaaagattactag-------------agaatatatatataaaacctaataaactctaaac 27313910  T
Q  214 taataggctcgttagcatagcacattact 242  Q
    ||||||||||||||||||||| |||||||    
T  27313909 taataggctcgttagcatagcccattact 27313881  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 2593010 - 2593076
Alignment:
Q  92 aaggaggatcaaacaaagctcttgataccatgttaacaatatatggtttcaatagagaataacaaaga 159  Q
    |||||||||||||  |||||||  ||| |||||||||||| || ||||||||||||||||||||||||    
T  2593010 aaggaggatcaaaacaagctcta-atatcatgttaacaatctagggtttcaatagagaataacaaaga 2593076  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 29554712 - 29554669
Alignment:
Q  88 gttcaaggaggatcaaacaaagctcttgataccatgttaacaat 131  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||    
T  29554712 gttcaaggtggatcgaacaaagcttttgataccatgttaacaat 29554669  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 10740787 - 10740746
Alignment:
Q  89 ttcaaggaggatcaaacaaagctcttgataccatgttaacaa 130  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  10740787 ttcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 18792736 - 18792782
Alignment:
Q  88 gttcaaggaggatcaaacaaagctcttgataccatgttaacaatata 134  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  18792736 gttcaaggcggatcgaacaaagctcttcatacaatgttaacaatata 18792782  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 21858255 - 21858213
Alignment:
Q  92 aaggaggatcaaacaaagctcttgataccatgttaacaatata 134  Q
    |||||||||||||  |||||||||||||||||||||| |||||    
T  21858255 aaggaggatcaaatcaagctcttgataccatgttaactatata 21858213  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 28064690 - 28064728
Alignment:
Q  178 agagaatatatatataaaacctaatagactctaaactaa 216  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  28064690 agagaatataaatataaaacctaatggactctaaactaa 28064728  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 11827948 - 11828004
Alignment:
Q  186 tatatataaaacctaatagactctaaactaataggctcgttagcatagcacattact 242  Q
    ||||||||||||||||| ||||||||||||||||||    ||||||||| |||||||    
T  11827948 tatatataaaacctaattgactctaaactaataggcctaatagcatagcccattact 11828004  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 46964313 - 46964355
Alignment:
Q  90 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 132  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  46964313 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 46964355  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 21812671 - 21812626
Alignment:
Q  114 tgataccatgttaacaatatatggtttcaatagagaataacaaaga 159  Q
    |||||||||||||||||||||   |||||| |||||||||||||||    
T  21812671 tgataccatgttaacaatataatatttcaaaagagaataacaaaga 21812626  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 24131981 - 24131938
Alignment:
Q  89 ttcaaggaggatcaaacaaagctcttgataccatgttaacaata 132  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||    
T  24131981 ttcaaggtggatcaaaacaagctcttgataccatgttaacaata 24131938  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 16869726 - 16869684
Alignment:
Q  90 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 132  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  16869726 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 16869684  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 11405 - 11359
Alignment:
Q  88 gttcaaggaggatcaaacaaagctcttgataccatgttaacaatata 134  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  11405 gttcaaggcggatcgaacaaagctcttcatacaatgttaacaatata 11359  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 8985790 - 8985748
Alignment:
Q  90 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 132  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  8985790 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 8985748  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 9253288 - 9253329
Alignment:
Q  118 accatgttaacaatatatggtttcaatagagaataacaaaga 159  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  9253288 accatgttaacaaaacaaggtttcaatagagaataacaaaga 9253329  T

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